Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00073066, PPL01S_RS14525 (ligD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_000730665.1
GCF_000730665.1|latest
Locus Tag
PPL01S_RS14525
Name
ligD
Replicon contig_76
Genomic location 27206 - 29476 (+ strand)

Cross-References

RefSeq WP_016391719.1
GI 511758481
EC Number 6.5.1.1

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-dependent DNA ligase
Synonyms
Evidence for Translation
Charge (pH 7) 12.73
Kyte-Doolittle Hydrophobicity Value -0.504
Molecular Weight (kDa) 84.6
Isoelectric Point (pI) 9.26

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown (This protein may have multiple localization sites) Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003336 (490 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PPL01S_RS14525
Search term: ligD

Human Homologs

References

No references are associated with this feature.