Pseudomonas plecoglossicida NBRC 103162 = DSM 15088 assembly GCF_00073066, PPL01S_RS14525 (ligD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003910 DNA ligase (ATP) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01068
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd07906 Adenylation_DNA_ligase_LigD_LigC - - 143 326 2.28038E-84
Gene3D G3DSA:3.30.1490.70 - - - 156 323 1.3E-44
Coils Coil Coil - - 264 284 -
CDD cd04862 PaeLigD_Pol_like IPR033651 LigD polymerase domain, PaeLigD-type 486 710 1.60582E-110
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 167 282 1.3E-44
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 328 446 3.34E-29
CDD cd07971 OBF_DNA_ligase_LigD - - 328 445 5.20782E-52
Pfam PF13298 DNA polymerase Ligase (LigD) IPR014144 DNA ligase D, 3'-phosphoesterase domain 37 83 4.0E-14
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 327 448 2.7E-37
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 135 326 5.28E-47
PANTHER PTHR42705 BIFUNCTIONAL NON-HOMOLOGOUS END JOINING PROTEIN LIGD - - 174 752 1.2E-101
Gene3D G3DSA:3.90.920.10 DNA primase, PRIM domain - - 476 756 2.3E-94
MobiDBLite mobidb-lite consensus disorder prediction - - 446 469 -
Pfam PF04679 ATP dependent DNA ligase C terminal region IPR012309 DNA ligase, ATP-dependent, C-terminal 344 440 4.6E-25
NCBIfam TIGR02779 JCVI: non-homologous end-joining DNA ligase, ligase domain IPR014146 DNA ligase D, ligase domain 145 446 7.7E-112
MobiDBLite mobidb-lite consensus disorder prediction - - 1 25 -
MobiDBLite mobidb-lite consensus disorder prediction - - 116 137 -
NCBIfam TIGR02778 JCVI: non-homologous end-joining DNA ligase, polymerase domain IPR014145 DNA ligase D, polymerase domain 470 711 5.5E-84
NCBIfam TIGR02776 JCVI: DNA ligase D IPR014143 DNA ligase D 154 739 0.0
Pfam PF01068 ATP dependent DNA ligase domain IPR012310 DNA ligase, ATP-dependent, central 149 325 5.4E-28
MobiDBLite mobidb-lite consensus disorder prediction - - 446 461 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.