Pseudomonas frederiksbergensis SI8, JZ00_RS26500
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas frederiksbergensis SI8 - Assembly GCF_000802155.2
GCF_000802155.2|latest |
| Locus Tag |
JZ00_RS26500
|
| Name |
Synonym: JZ00_27020 |
| Replicon | contig00024 |
| Genomic location | 11707 - 13653 (- strand) |
Cross-References
| RefSeq | WP_039594185.1 |
| GI | 746564114 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
DeoR family transcriptional regulator
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -8.24 |
| Kyte-Doolittle Hydrophobicity Value | -0.044 |
| Molecular Weight (kDa) | 71.6 |
| Isoelectric Point (pI) | 6.10 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 3PJT | LYASE | 11/10/10 | Structure of Pseudomonas fluorescence LapD EAL domain complexed with c-di-GMP, C2221 | Pseudomonas fluorescens | 2.5154 | X-RAY DIFFRACTION | 90.3 |
| 3PJU | LYASE | 11/10/10 | Structure of Pseudomonas fluorescence LapD EAL domain complexed with c-di-GMP, P6522 | Pseudomonas fluorescens | 2.4991 | X-RAY DIFFRACTION | 90.3 |
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG001350 (454 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: JZ00_RS26500
Search term: DeoR family transcriptional regulator
|
Human Homologs
References
No references are associated with this feature.