| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas frederiksbergensis SI8 - Assembly GCF_000802155.2 |
| Species | Pseudomonas frederiksbergensis |
| Strain | SI8 |
| Description/Title | Microbe sample from Pseudomonas frederiksbergensis |
| Annotated Genes | 5933 |
| Partial Genes | 131 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Kuwait |
| Isolation Source | soil |
| Sample Provider | |
|---|---|
| Name | Lisa Brown |
| lisa.brown@udri.udayton.edu | |
| Institution | UDRI |
| Date Collected | 2007 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 65 |
| Contig N50 | 320712 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03001946 |
| NCBI Taxonomy ID | 104087 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5866 |
| CDS | 5801 |
| pseudo | 67 |
| tRNA | 58 |
| rRNA | 5 |
| ncRNA | 2 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2567 |
| Cytoplasmic Membrane | 1300 |
| Periplasmic | 189 |
| Outer Membrane | 133 |
| Extracellular | 52 |
| Unknown | 1419 |
| Unknown (This protein may have multiple localization sites) | 141 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |