Pseudomonas fluorescens C1, VC33_RS08535
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas fluorescens C1
GCF_000967945.1|latest |
| Locus Tag |
VC33_RS08535
|
| Name |
Synonym: VC33_08535 |
| Replicon | contig_6 |
| Genomic location | 127052 - 127924 (+ strand) |
Cross-References
| RefSeq | WP_046028440.1 |
| GI | 802109839 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
ABC transporter
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -1.96 |
| Kyte-Doolittle Hydrophobicity Value | 0.055 |
| Molecular Weight (kDa) | 32.0 |
| Isoelectric Point (pI) | 6.60 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG004529 (504 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: VC33_RS08535
Search term: ABC transporter
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
E-value:
7.0e-14
Percent Identity:
26.3
|
|
Ensembl
110, assembly
GRCh38.p14
|
ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
E-value:
7.0e-14
Percent Identity:
26.3
|
|
Ensembl
110, assembly
GRCh38.p14
|
ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
E-value:
7.0e-14
Percent Identity:
26.3
|
References
No references are associated with this feature.