| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas fluorescens C1 |
| Species | Pseudomonas fluorescens |
| Strain | C1 |
| Description/Title | MIGS Cultured Bacterial/Archaeal sample from Pseudomonas fluorescens |
| Annotated Genes | 5747 |
| Partial Genes | 76 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Denmark: Hygum |
| Isolation Source | surface soil |
| Latitude/Longitude | 55.32 N 8.33 E |
| Sample Provider | |
|---|---|
| Name | Yanan Qin |
| qin@plen.ku.dk | |
| Institution | University of Copenhagen |
| Date Collected | May-2013 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | pfluorescens | - |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | |
| Contigs | 58 |
| Contig N50 | 245990 |
| Assembly Level | Scaffold |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03381134 |
| NCBI Taxonomy ID | 294 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Feature | Count |
|---|---|
| gene | 5719 |
| CDS | 5650 |
| tRNA | 64 |
| pseudo | 28 |
| rRNA | 3 |
| ncRNA | 2 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2469 |
| Unknown | 1346 |
| Cytoplasmic Membrane | 1331 |
| Periplasmic | 218 |
| Unknown (This protein may have multiple localization sites) | 117 |
| Outer Membrane | 115 |
| Extracellular | 54 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |