Pseudomonas fluorescens PICF7, PFLUOLIPICF7_RS23950 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas fluorescens PICF7
GCF_000963495.1|latest |
| Locus Tag |
PFLUOLIPICF7_RS23950
|
| Name |
ligD
Synonym: PFLUOLIPICF7_24270 |
| Replicon | chromosome |
| Genomic location | 5196012 - 5198471 (+ strand) |
Cross-References
| RefSeq | WP_045792199.1 |
| GI | 796491415 |
| EC Number | 6.5.1.1 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
ATP-dependent DNA ligase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 18.52 |
| Kyte-Doolittle Hydrophobicity Value | -0.392 |
| Molecular Weight (kDa) | 90.9 |
| Isoelectric Point (pI) | 9.75 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results | Analysis not done |
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG003336 (490 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PFLUOLIPICF7_RS23950
Search term: ligD
Search term: ATP-dependent DNA ligase
|
Human Homologs
References
No references are associated with this feature.