Pseudomonas fluorescens PICF7

Strain Overview
Organism Name Pseudomonas fluorescens PICF7
Species Pseudomonas fluorescens
Strain PICF7
Description/Title Sample from Pseudomonas fluorescens PICF7
Annotated Genes 5617
Partial Genes 37
Host Information
Geographic Location
Sample Provider
Name
E-mail
Institution CBGP
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pfluorescens -
glnS
48		 recA
38		 rpoB
~65		 nuoD
~42		 ileS
~50		 gyrB
41		 rpoD
36
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000963495.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN03446264
NCBI Taxonomy ID 1334632
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas fluorescens PICF7, complete genome.

Annotated Features

Feature Count
gene 5574
CDS 5485
tRNA 69
pseudo 43
rRNA 19
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2401
Cytoplasmic Membrane 1337
Periplasmic 203
Outer Membrane 143
Extracellular 58
Unknown 1203
Unknown (This protein may have multiple localization sites) 140

Replicons

Name Length GC
Pseudomonas fluorescens PICF7, complete genome. 6136735 bp 60.4%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF