Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS22900
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas chlororaphis UFB2 isolate Soil
GCF_001023535.1|latest |
| Locus Tag |
VM99_RS22900
|
| Name |
Synonym: VM99_22900 |
| Replicon | chromosome |
| Genomic location | 5252271 - 5253881 (+ strand) |
Cross-References
| RefSeq | WP_047738819.1 |
| GI | 836581469 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
microcin ABC transporter ATP-binding protein
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 9.68 |
| Kyte-Doolittle Hydrophobicity Value | -0.080 |
| Molecular Weight (kDa) | 59.4 |
| Isoelectric Point (pI) | 8.92 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results | Analysis not done |
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG003590 (535 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: VM99_RS22900
Search term: microcin ABC transporter ATP-binding protein
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
transporter 1, ATP binding cassette subfamily B member [Source:HGNC Symbol;Acc:HGNC:43]
E-value:
1.0e-18
Percent Identity:
30.7
|
References
No references are associated with this feature.