Pseudomonas chlororaphis UFB2 isolate Soil

Strain Overview
Organism Name Pseudomonas chlororaphis UFB2 isolate Soil
Species Pseudomonas chlororaphis
Strain UFB2 isolate Soil
Description/Title Microbe sample from Pseudomonas chlororaphis
Annotated Genes 5556
Partial Genes 70
Host Information
Geographic Location
Location Name USA
Isolation Source soil
Latitude/Longitude 33.2 N 90.5 W
Sample Provider
Name PENG DENG
E-mail dengpeng@deng-peng.com
Institution Mississippi state university
Date Collected 2011-08-03

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001023535.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN03395035
NCBI Taxonomy ID 587753
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas chlororaphis strain UFB2, complete genome.

Annotated Features

Feature Count
gene 5533
CDS 5450
tRNA 65
pseudo 23
rRNA 17
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2451
Cytoplasmic Membrane 1265
Periplasmic 178
Outer Membrane 128
Extracellular 60
Unknown 1236
Unknown (This protein may have multiple localization sites) 132

Replicons

Name Length GC
Pseudomonas chlororaphis strain UFB2, complete genome. 6360256 bp 62.0%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF