Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS16060
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas chlororaphis UFB2 isolate Soil
GCF_001023535.1|latest |
| Locus Tag |
VM99_RS16060
|
| Name |
Synonym: VM99_16060 |
| Replicon | chromosome |
| Genomic location | 3623549 - 3624520 (- strand) |
Cross-References
| RefSeq | WP_042728325.1 |
| GI | 757175729 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
transpeptidase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -4.65 |
| Kyte-Doolittle Hydrophobicity Value | 0.011 |
| Molecular Weight (kDa) | 34.5 |
| Isoelectric Point (pI) | 5.63 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results | Analysis not done |
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG002715 (536 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: VM99_RS16060
Search term: transpeptidase
|
Human Homologs
References
No references are associated with this feature.