Pseudomonas chlororaphis UFB2 isolate Soil, VM99_RS11165
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas chlororaphis UFB2 isolate Soil
GCF_001023535.1|latest |
| Locus Tag |
VM99_RS11165
|
| Name |
Synonym: VM99_11165 |
| Replicon | chromosome |
| Genomic location | 2550380 - 2551507 (+ strand) |
Cross-References
| RefSeq | WP_047736575.1 |
| GI | 836579188 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
glycerophosphodiester phosphodiesterase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 1.93 |
| Kyte-Doolittle Hydrophobicity Value | -0.353 |
| Molecular Weight (kDa) | 41.0 |
| Isoelectric Point (pI) | 7.92 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results | Analysis not done |
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000339 (769 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: VM99_RS11165
Search term: glycerophosphodiester phosphodiesterase
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
glycerophosphodiester phosphodiesterase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25974]
E-value:
5.7e-16
Percent Identity:
42.1
|
|
Ensembl
110, assembly
GRCh38.p14
|
glycerophosphodiester phosphodiesterase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25974]
E-value:
5.7e-16
Percent Identity:
42.1
|
|
Ensembl
110, assembly
GRCh38.p14
|
glycerophosphodiester phosphodiesterase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25974]
E-value:
5.7e-16
Percent Identity:
42.1
|
|
Ensembl
110, assembly
GRCh38.p14
|
glycerophosphodiester phosphodiesterase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25974]
E-value:
5.7e-16
Percent Identity:
42.1
|
References
No references are associated with this feature.