Pseudomonas sp. M1, PM1_RS20605
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas sp. M1 - Assembly GCF_000317185.3
GCF_000317185.3|latest |
| Locus Tag |
PM1_RS20605
|
| Name |
Synonym: PM1_0220975 |
| Replicon | PM1contig_002 |
| Genomic location | 4470428 - 4471489 (+ strand) |
Cross-References
| RefSeq | WP_009618731.1 |
| GI | 497304514 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
porin
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -10.43 |
| Kyte-Doolittle Hydrophobicity Value | -0.474 |
| Molecular Weight (kDa) | 37.7 |
| Isoelectric Point (pI) | 4.91 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 5U1H | PEPTIDE BINDING PROTEIN | 11/28/16 | Crystal structure of the C-terminal peptidoglycan binding domain of OprF (PA1777) from Pseudomonas aeruginosa | Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) | 1.5 | X-RAY DIFFRACTION | 97.5 |
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG003618 (537 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PM1_RS20605
Search term: porin
|
Human Homologs
References
No references are associated with this feature.