Pseudomonas sp. M1, PM1_RS28300
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas sp. M1 - Assembly GCF_000317185.3
GCF_000317185.3|latest |
| Locus Tag |
PM1_RS28300
|
| Name |
Synonym: PM1_0228855 |
| Replicon | PM1contig_003 |
| Genomic location | 1370668 - 1371978 (+ strand) |
Cross-References
| RefSeq | WP_009614485.1 |
| GI | 497300268 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
tRNA and rRNA cytosine-C5-methylase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 4.43 |
| Kyte-Doolittle Hydrophobicity Value | -0.108 |
| Molecular Weight (kDa) | 47.2 |
| Isoelectric Point (pI) | 8.15 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000017 (536 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PM1_RS28300
Search term: tRNA and rRNA cytosine-C5-methylase
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.2e-25
Percent Identity:
29.3
|
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.2e-25
Percent Identity:
29.3
|
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.2e-25
Percent Identity:
29.3
|
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.2e-25
Percent Identity:
29.3
|
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.2e-25
Percent Identity:
29.3
|
|
Ensembl
110, assembly
GRCh38.p14
|
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value:
1.2e-25
Percent Identity:
29.3
|
References
No references are associated with this feature.