Pseudomonas putida NBRC 14164, PP4_30630 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida NBRC 14164 - Assembly GCF_000412675.1
GCF_000412675.1|latest |
| Locus Tag |
PP4_30630
|
| Name |
ligD
|
| Replicon | chromosome |
| Genomic location | 3465627 - 3468095 (+ strand) |
Cross-References
| RefSeq | YP_008114100.1 |
| GI | 512686120 |
| Entrez | 16135825 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
DNA ligase D
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 14.17 |
| Kyte-Doolittle Hydrophobicity Value | -0.425 |
| Molecular Weight (kDa) | 91507.6 |
| Isoelectric Point (pI) | 9.22 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 313 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG003336 (490 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PP4_30630
Search term: ligD
Search term: DNA ligase D
|
Human Homologs
References
No references are associated with this feature.