Pseudomonas putida NBRC 14164, PP4_30630 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida NBRC 14164 DNA, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGCTCAGCGACACCCTGCTGTGCCTGGTGGCGCGCATGGCCATCGCCTCGACCTTCTTCCTGTCCGGGCGCACCAAGGTCGAAGGGTTTCTCAGCATCA CACCCAGTACCTATGACCTGTTCCAGAGCGAATATGCCCTGCCGCTGGTTTCGCCCTGGCTTGCGGCCCACCTGGCCACCTATGCCGAACACCTGTTCCC CCTGTTGCTGGTGCTTGGCCTGTTTACCCGGCTGTCGGCGCTGGCCCTGCTGGGCATGACCACGGTGATCGAAATTTTCGTCTACCCGGATGCCTGGCCG ACCCATCTGACGTGGGCGGCCTTGTTGCTACTGTTGATCGCGCGAGGCGCCGGTAGGTTGTCGCTGGATCGGGCCCTGGGGCTGCGTTGAGCCTCTGGCA GTGGGCCGGTTCGTCGGTCCGCGACCCCACGCTTTTTTTGAACTCCATGCGCAGGCGCCCTCTCCCAATGAAGAGACCGCGAACTGTCCCGGAGCCCGCC
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| DNA Sequence for Gene |
>PP4_30630
|ligD
ATGGCCAAGCCCCTGCAGGAGTACCTGCGCAAGCGTGACTTCAACGCCACACCCGAGCCGGCCGGCAAGCGTGCCCACCCACGGCCGGCTCACGGGTTGC AGTACTGCATCCAGAAGCACGACGCCAGCCACCTGCACTATGACTTTCGCCTGGAGCTGGATGGCACCCTGAAAAGCTGGGCGATTCCCAAGGGCCCTTC CCTCGACCCCAAGGTCCGCCGCCTGGCCGTGCATGTAGAAGACCATCCGCTGGACTACGCCAGCTTCGAAGGGCACATCCCTGAAGGCCACTACGGCGCC GGCGACGTGATCGTGTGGGACCGGGGGCTCTGGGAGCCCGAAGGCGACCCGCGCGAGGCCTATGCCAAGGGCAAGCTGCGCTTTCGCCTGCAAGGTGAAA AGCTGTCGGGGGTCTGGAACCTGTTTCGTACCCACCTGGCTGGCAAGAAAGAGCAGTGGATGCTGGTCAAGTCCCACGATGGCGAGGCCCGCAGCGAAGC GGACTACAGCATCGTCGAAGCCCTGCCGGACAGCGTATTGAGCGACCGTACACTGGTCCCCCGCCGCCCAGCCAGGGCGGCGACCTCCACGCGCAAGCGC AAGGCCAGCGCTGGCGCCCTGCCGGAGATGCTCCAGCCGCAGCTGGCAACCCTGGCCGATTCCCCCCCCGAGGGTGACTGGCGATACGAGGTCAAGTTCG ATGGTTACCGCATGCTGGCCCGCATCGACGGGGACGATGTGCGCCTGTTTACCCGCAATGGCCACGACTGGAGCGCAAAGCTGCCCCATCAGGTGCAGGC GCTGAAAGCGTTGGGGCTCGACTCGGCATGGCTGGACGGTGAGATGGTGGTCACTGACGAGAACGGCGTGGCCGACTTCCAGGCCTTGCAGGCCGCGTTC GACAACGAGCACGACGATGACATTACCTACTACCTGTTCGACCTGCCCTACCTCGGCGGCAAGGACCTGCGTGAATTGCCTGTGCAAGACCGCCGGGCGA CCTTGGCCAAACTGCTGAAGCACAACGCATCGGCCATCCTGAAGTTTTCCGAAGACTTCAACCAGCCGGTCGACGCGCTGCTCGACAGCGCCTGCCGGTT AGGCCTGGAAGGCCTGATCGGCAAGCGCGCCGACAGCCCCTACGTTGGCCGGCGCAGCAGCGACTGGGTCAAGCTCAAGTGCACGCAACGCCAGGAGTTC GTGATCGTCGGCTACACCGCGCCCAAGGGCAGCCGCCAAGGCTTTGGGGCCCTGCTGCTGGCGCTGCACGACACCGACAGCGGCCAGTTGCGCTACGCCG GCAAGGTGGGCACCGGCTTCAGTGCTGCCACGCTGACGAGCATCCTCACCCGCCTGAAACCCCTGCACACCGCCAAGCCACCCTTGCCTGAGCCCCCCAG CGGTGCCGATGCGCGGGGCGTGCACTGGCTCAAGCCAGAACTGCTGGCCGAGGTCGCCTACGCCCAGATGACCCGCACAGGGATCGTGCGCCATGCGGTT TTTCACGGGTTGCGCGACGACAAGCCCGCCACTGCCATTGCCCTGGAACGTGCAATGCCGGTAAAGAACGCAGCACATGCAGAGCCCAAGGGTTTGAGCA ACCTGCACCTGACCCACCCCGACCGCGTGATCGACAAGACCAGTGGCACCAGCAAACGACAGGTGGCGGAGTACTACGCCCAAGTCGCCGACTGGCTGCT GCCACAGCTCGAACACCGCCCCGTGGCGCTGGTGCGCGCACCGGAGGGCCTGGACGGCGAGCTGTTCTTTCAGAAGCATGCGGGGCAGTTGCACCTGCCC AAGCTGACCAGCTACACCAAGGCCCAGGCCGGCCAGGCGGCAATGGTGCTCAACAGCGCCGAGAGCCTATTGGGCGCAGTACAGATGAACATGCTTGAAC TGCACACCTGGAACGCCACCGACAAAAATTTCGACAGGCCTGACCGCTTCATCCTCGACCTCGACCCCGACCCGGCATTGCCATGGAAGGCCATGCTCGA GGCCACCCAGCTGCCCCTCACCCTGCTCGATGAGCTGGGCCTGAAGGTGTTTCTCAAGACCAGCGGTGGCAAAGGCATGCACCTGGTCGTGCCGCTCACC CGTCGGGCCGGCTGGGAGGAAGTGAAGGACTTCAGCCATGCCCTGGTCAAACACATGGCAGACTTGTTCCCGGACCGGCTCAGCGCGGTCTCCGGGCCCA AGAACCGGGTCGGGCGCATCTTCATCGACTACCTGCGCAACGGCAAGGGCGCTACCACCGTGGCCGCCTACTCGCTGCGCGCCCGCGAAGGCCTGCCAGT GTCGGTGCCGATCTGGCGCGAGGAGCTGCCCAAACTCAAGAGTGCCAACCAATGGAATATCGGCAACTTGCAGGCGCGGCTTGCGCAGGTGGACGACCCT TGGGCCGAGCTGGGCTCGACCCGGCAATCGATCACCCTGCGCATGCGCAAGCAACTGGGGATCGCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGACTTCGCTCACCTCGCCCGCCTGCTGCACCGCTTCGGTACCCGTTTGCGGGCCATCGATCTCGACCCCTTGCTGCCTGAACTGTTGCAGGCACTTCG AGCCGAACAGCTAGACCTGCTACCCCTGCCCGGCCACGGGCGCACCCTCGAGCGCTGGCGGGCCTTGGCGCGGGTTGCCGGTTGCGATCTCGGCTTGGCC AAGCTGTATGAAGGCCACACCGATGCCCTGGCAATCCTCGCCGAGTGCGGCGCCGCCCAGCATGCTCACGACGGTATCTGGGGCATGTGGGCCGCGGAGC CGCCGGATGCCAGGGCCCACATCGTCGCGCGCCATGGCGAACGGGTTCAGCTGCAAGGCCGAAAAGCATGGTGCTCGGGCGCGCTGCAGATCGATCGAGC GCTGCTGACCGCCTGGGAGAATGACCAGCCACAGCTGGTGGCCATTGAACTGTCACACCCCAGCCAGCGCATCCAGGCCGAGCAATGGCAGGCCGTAGGC
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| Amino Acid Sequence |
>DNA ligase D
MAKPLQEYLRKRDFNATPEPAGKRAHPRPAHGLQYCIQKHDASHLHYDFRLELDGTLKSWAIPKGPSLDPKVRRLAVHVEDHPLDYASFEGHIPEGHYGA GDVIVWDRGLWEPEGDPREAYAKGKLRFRLQGEKLSGVWNLFRTHLAGKKEQWMLVKSHDGEARSEADYSIVEALPDSVLSDRTLVPRRPARAATSTRKR KASAGALPEMLQPQLATLADSPPEGDWRYEVKFDGYRMLARIDGDDVRLFTRNGHDWSAKLPHQVQALKALGLDSAWLDGEMVVTDENGVADFQALQAAF DNEHDDDITYYLFDLPYLGGKDLRELPVQDRRATLAKLLKHNASAILKFSEDFNQPVDALLDSACRLGLEGLIGKRADSPYVGRRSSDWVKLKCTQRQEF VIVGYTAPKGSRQGFGALLLALHDTDSGQLRYAGKVGTGFSAATLTSILTRLKPLHTAKPPLPEPPSGADARGVHWLKPELLAEVAYAQMTRTGIVRHAV FHGLRDDKPATAIALERAMPVKNAAHAEPKGLSNLHLTHPDRVIDKTSGTSKRQVAEYYAQVADWLLPQLEHRPVALVRAPEGLDGELFFQKHAGQLHLP KLTSYTKAQAGQAAMVLNSAESLLGAVQMNMLELHTWNATDKNFDRPDRFILDLDPDPALPWKAMLEATQLPLTLLDELGLKVFLKTSGGKGMHLVVPLT RRAGWEEVKDFSHALVKHMADLFPDRLSAVSGPKNRVGRIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWREELPKLKSANQWNIGNLQARLAQVDDP WAELGSTRQSITLRMRKQLGIA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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