Pseudomonas protegens Pf-5, PFL_6096

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_6096
Name
Replicon chromosome
Genomic location 6925413 - 6929873 (+ strand)

Cross-References

RefSeq YP_263154.1
GI 70733379
Entrez 3480466
INSDC AAY95284.1
NCBI Locus Tag PFL_6096
UniParc UPI000054E287
UniProtKB Acc Q4K3M9
UniProtKB ID Q4K3M9_PSEF5
UniRef100 UniRef100_Q4K3M9
UniRef50 UniRef50_A0A0D0REH3
UniRef90 UniRef90_Q4K3M9

Product

Feature Type CDS
Coding Frame 1
Product Name
Rhs family protein
Synonyms
Evidence for Translation
Charge (pH 7) -15.42
Kyte-Doolittle Hydrophobicity Value -0.519
Molecular Weight (kDa) 164911.7
Isoelectric Point (pI) 6.34

Subcellular localization

Individual Mappings
Localization Confidence PMID
Outer Membrane Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
7Q97 TOXIN 11/12/21 Structure of the bacterial type VI secretion system effector RhsA. Pseudomonas protegens Pf-5 3.3 ELECTRON MICROSCOPY 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 203 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000092 (1670 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_6096

Human Homologs

References

No references are associated with this feature.