Pseudomonas protegens Pf-5, PFL_6096
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas protegens Pf-5 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CCATCAGCGCCAAGGCCAAAGCCCCCTTTTCCGCCCCCAAAGGCTAATGAACGGACGCCCATGCCATGACCTATCGCCTCAATGAATTGCAGTTCCAACT GCCTGCCGGCGAACTGCAGGACGCCTCGATCAACATCCTCAAGTTCCCGGCCTTGGGCACTTCGCTGATCGTCAGCCGCAGCCTGCTGGGGGACGGCGAA ACCCTGGAGAGCAACCTGGCCAGCCAGCTGCAGCGGCTGGAGCAGCAAGTCCAGGACCTGCGCTGCCAGGCTCCGCAACCGGTGCAGCTGGGCCCGGCCC AGGACATCCAGGGCCTGGAGCTGCGCAGCCAGTTCAACAAGGGCAAAGAACAGGTGTTCCAGTTCCAGCTGGCCCTGGTGCTGCCCGGCACCCGACAGAT GCTCGCCATGAGCTACGTCAAGGCACAGAAGCTCGGCGACGCGGAAGCCGCCCATTGGGCGCAGATCAAGAACACCCTGGTGCTGGGCTGAGGCAGGGCC
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| DNA Sequence for Gene |
>PFL_6096
ATGTCTGACGCACTGTGGGCCGCCCGCCTGGGTGACGGGCTGGAACACACCTCGATGATGGCCGACATTCTCGGCGGTGTGCTGGAGGTGGCGGCCAACG TTGCCATCGGCGCCCTGGCGACCATGGCAGTAGCCGCGGCGGCAGGCATCACCGTGGCCACCGGCGGCCTCGGCGCCTGTGTGCTGGGGCTGGTGGTGGG CGTCGTCGTCGGCGTGGTCATGAGCAAGACCGGAGCCGACAAGGGCCTGAGCAATTTATGCGAGGGTATCGCCAACGCCCTGTTCCCGCCCTCGATCCAG GCCACCATCGCCAGCGGCTCGAAAAAGGTCCTGACCAACAACAAGCCGGCGGCCCGCGCGGCCGGCATCGCACCGCCGACACAGATCAGCGGCGACGGCG CCGAAGAAGGCGAAGCCACCGACACCCCGTCGGCAACGCCCGAGGAAGGGCCCGGTTTCCTCGACATGGCCAAGGAGTTTTTCTCGCAGATGTGGCGGCC CACCGTGGCCTCCCCGGCGCCAGGCTCCCAGACCAAGGAACTGGACCTGGTGACCTGCACCAAGCACCCGCCGATGCCGGTGCAGTATCTGGCTGAAGGC TCGGAAAAGGTCAGCATCGACGGCCAGCCGGCAGTACGCAGCGGCGACCGCAGCACCTGCGATGCCAAGGTAGTGTCGGCCGGGCCTATCTCCCCGAACG TGACCATCGGCGGTGGCTCGGTGGTGGTGCGCGAGATCCGTAGCGGCAAGACCCCGGGGGTGGGCCTGGCGGTGACCGTGCTGATGATGCTCAAGGGCGG CAAGGGCAAGTTCCTCAGCAACCTGCCGTGCATGCTGATGGCCGGGGTCAATTCCTTTGTCGTCAGCCAGGCCACCAATGCTTTGACCCAGGCCGTCGTC GCCTCGACCCACCCGGTGCATGCAGCCACCGGGGCCAAGGTGCTCGGAGCCGACGACGATCTGGATTTCACCCTGCCCGGGCTGATGCCCATCGAATGGC AACGCTTCTACAACAGCCGCGACGAACGTCGTGACGGCCTGCTCGGGGCCGGCTGGAGCTTGCCTTACGAGATCAGCGTCCAGATCGAGCCCCACCCCGA AGGTGGCGAGCGTCTGCTCTACATTGATGAGCAAGGACGCCGCATCGACATGGGCTCCATTGCCCTGGGTGCAGGAGCCTTCAGCCCCGGTGAAGGCTTG AGCGTGCGACGCAACGAGAACGGACAGTTGCTGATCGAAAGCAGCGACGGTATCTACCGTCTGTTCGAGCCGCTGCCGGGCGACTCCTCGCGGCTGCGCC TGAGCCTGCTGGGGGACCGCAACGACAACCGTCTGCACCTGGAGTACGACTCGTCCGGACGCCTCTGGCTGCTGCGTGACACCTTTGAACAGGCGCAGCT CGAACTGAGCTACAGCACGCTCTGGCCCGGTCGGATTGCCCAGGTCGAACGGCTGTACCCCGACCAGCAACGGGAAGTGCTGGTCAGCTATGACTACGAT GCGGCAGGAGACCTGGCACAGGTGCGCGATAGCGAAGGCCAGGTACAGCGTCGCTTCGCTTATGACGCCGGCCACCGGATGATCGAACATCAATTGGCCA CCGGGCTGCGCTGCTTCTATCAATGGACACAATTTGCCGACCAGCAGTGGCGAGTGACCCGTCACTGGACCGACGAAGGCGATAGCTATCAGTACGACTA TGATCTGGAGGCGGGAATCACCCAGGTCACCGACAGCCTGCAACGCCTCAGCCGCCGCCGCTGGAACAGCCAGTTGCAGATCGTCGAGTACACCGACAAC CTCAACCAGACATGGGCCTTCGAGTGGAACGATGAGCGCCAACTGCTCAGCGCCACCGACCCCTTGGGAGGGCGCTATGCCTATAGCTACGACGAAACCG GCAACCTGATAGCCGAGACCGATCCTCTGGGGCACAGCCATTCGACCTTGTGGCTGGAGCACTGGTCGCTGCCACAGACCCTGACCGATCCCGCCGGAGA AAGCTGGCACCTGCGCTACGATCCCCGGGGCAACTGTATCGCCGAAGTAGACCCGCTGGGCCAGGTGACCCAGTACCGCCATGACGCGCACGGCCAGGTG GTGGAGATCATCGATGCCGCGGGAAGAAGCCGGAAGATGCGCTGGAACTCGTCCGGGCAATTGCTTGAACACCTGGACTGCTCGGGCTATCCAACCCGCT TCGAATACGATCGACGCGGCAACGTGAAAGCCATCATCGATGCCCTTGGCGAGCACACCCGGTTCCATTACGACTGCCAGGGACGGTTGCTGAGCAGCCA ACTGGCCGATGGGCGCGCCGAGCATTTTCAACGCAGCAGCAACGGCCAGCTACAGGGCTACACCGACCCTTCCGGCTACACCACGCTCTACCAGTACAAC CGGCGCGGGCAGATACGCCAGCGCATCGACGCTCACGGCCGACAGGTCCGGTTCGACTATGACGCGTACGGACGGCTGCTGGCGCTCACCAACGAGAACG GCGAAAGCTATCGCTTTGCCTGGGACGCCGGCAACCGCCTGAGCGAACAGCAGGACCTCGACGGCAGTGCCAAACGCTATGGCTATGACCTGCTGAACAA CGTCGTCGAACTCCAGTCCCACCCCGCCCCTTATGGCACCGGGCTGAGCGCCGTGCCCGCGCAACCTATCGCGCCGATCATCCACCGGTTCGAGCGCGAT GCCGTGGGGCGGCTGCTGGCCAAAATCACAGACGATGGCCGCAGCCAATACACCTACGACCCCTTGAACCAACTGACCGCCGCCAGCTTTACCGACAACC TCGGCAACCAGCAGGCACTGAGTTTCAGCTACGACGCCCTGGGCCAATTACTCGAAGAACACACCGTGGCCGGCAGCCTGATCCATCGATACGACGAACT GGGCAATTTGACTCAGACCCAGCTACCGGACAAGCGTTGGCTCAACCGGCTCTATTACGGCAGCGGCCATCTGCACCAGATCAATCTCGATGGCCAGGTA GTCAGCGACTTTCAACGTGACCGCCTGCACCGTGAGGTGCTGCGCACCCAGGGTCAGATCAGCACTCGCAGCGAATACGACCGGTGTGGCCGCCTGCGCG CACGCCTGCAGCATTCCAGCCTGCTGGCAAACACCTTGCCAACAGCCCCGGAGCGACACCTGGAGTACGACGATAGCGATAATCTGGTGGGCCTGGCCGA GCGACATGCCACCGGGCAACATCGGCAACTGTTCCATTACGACGCGACCGGGCGAATCATTGCCAGCCAGGACGGCCTGCAGGGCCAGAAAGAAACCTTC GCCTATGACGCCGCCGCCAATTTGCTTGATGGCCCGAAGGCGGGCGCCGGGCTGGTGGTGCACAACAAATTGCTGACCTACCAGGACAAGCGCTACCGCT ACGATGCCTTCGGGCGAATGATTGAAAAACGCAGTGGTCGGCGAGGCGTGCAACGTTTTGCCTACGACGCCGAACACCGGTTGATCGAAGTGCGCAATCA GACCTCCAGCGGCGAAACCCTGGTCAGGATGCGCTACGACGTCTTGGGTCGCCGCATCAGCAAGAGCGAGTACGACAGCCAGGGCAACCTTCTGGGTGAA ACGCGATTCGTCTGGGATGGCCTGCGGCTGCTGCAGGAACAGCGTAATCAACAGACCAGCCTCTATGTCTATGAAGACCTGGGACATGCGCCCCTGGCGC GGGTCGACGGCCTTGGCGCGCAGCAGAAGATCCGCTACTACCACAACGACCTGAATGGCCTGCCTCAACAGCTTTGCGAGCCTGACGGCCATAGCGTCTG GCAGGCCCGCTATCAGGTCTGGGGCAATACTGTCGAAGAAATACGCGAGCCCTACTACATCGAGGAACAGAATCTCAGGTTCCAGGGCCAGTACCTGGAC CGCGAGACTGGATTGCACTTCAACACGTTCCGTTTCTACGACCCGGATATCGGGCGCTTCACCACGCCGGACCCCATCGGCCTGGCCGGAGGCTTGAACC TTTATCAGTACGCTCCCAACCCAATCGGTTGGATCGATCCGCTGGGCTGGATCTGCAAATCGGCCTACAGCGGCAGAAGGGGCACTACAAAAGCCAAAGC TGACCTCGAGAGGAACGGTTTCACTGTGGTAGGTGAAGAATTGACCATGAAGGTCAAACACCCTGTCACCCAGAAGTCCTATCGCATCAGGGCAGATATC ATCGCCAAGGACAAAGCCGGCAACTACCACGTGTTCGAAGTCAAAAATGGCAGCGGCAAACTGACCAAGAACCAACAGGGATCGGGAATGTTCGACATGA GCAATCCGGCCAATACTAACGGTGGCCTGGGCGGTGGCCTGATCAAACCGTCGGGCGCTACCCAAGGCCAGTTCGAAGTTGCGACCAAAACCGCCAGAGG TACCCAGTTCGGTGGCAATGGCGCACAGCATTCGGCCACCTTCTGGCTTCTTCGCTATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGAGTAATCGAGAAATGAAAGCAGACACCAAGGAATTGCGCAGCAACTTTGAAAAGGCACTCCAGCTTTTTTTGAAGAGCGAGCTCTCGGGTTACCCCG GAGTAAAAGTCACCAAGAACAAAGTGGTGGTTGCACAGAAAGAATCGGGCGCCGTGGCGACCCTGCATTTCGAATACCTGACCAACACCCGCGCCTACGA AATCCTCATCTTCGTCGAACACCCGGCCCTGCAGGCCGAGATCGACCAGATAAACCCGCCCTACCCGTCCAACCTGGCCAATCCGAAATTTATCTACAGC TTGTCGACGGTCAGTGAAAAAGCTGCCTGCCCGCTACTGCCCGTGACAGAGCAAGGTATTGAAAATACCTGCCAGGTGATTCTGCGCCAGCTCCAGGATG TTCACCTGCCTATTCTGTTCAACCTCTTCAACGTCAGCCCCGCGCTGGTGAGCGATGTCATAGACAGGCCAAAGTATTACTCCTATCCGGTCCCACTGAT
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| Amino Acid Sequence |
>Rhs family protein
MSDALWAARLGDGLEHTSMMADILGGVLEVAANVAIGALATMAVAAAAGITVATGGLGACVLGLVVGVVVGVVMSKTGADKGLSNLCEGIANALFPPSIQ ATIASGSKKVLTNNKPAARAAGIAPPTQISGDGAEEGEATDTPSATPEEGPGFLDMAKEFFSQMWRPTVASPAPGSQTKELDLVTCTKHPPMPVQYLAEG SEKVSIDGQPAVRSGDRSTCDAKVVSAGPISPNVTIGGGSVVVREIRSGKTPGVGLAVTVLMMLKGGKGKFLSNLPCMLMAGVNSFVVSQATNALTQAVV ASTHPVHAATGAKVLGADDDLDFTLPGLMPIEWQRFYNSRDERRDGLLGAGWSLPYEISVQIEPHPEGGERLLYIDEQGRRIDMGSIALGAGAFSPGEGL SVRRNENGQLLIESSDGIYRLFEPLPGDSSRLRLSLLGDRNDNRLHLEYDSSGRLWLLRDTFEQAQLELSYSTLWPGRIAQVERLYPDQQREVLVSYDYD AAGDLAQVRDSEGQVQRRFAYDAGHRMIEHQLATGLRCFYQWTQFADQQWRVTRHWTDEGDSYQYDYDLEAGITQVTDSLQRLSRRRWNSQLQIVEYTDN LNQTWAFEWNDERQLLSATDPLGGRYAYSYDETGNLIAETDPLGHSHSTLWLEHWSLPQTLTDPAGESWHLRYDPRGNCIAEVDPLGQVTQYRHDAHGQV VEIIDAAGRSRKMRWNSSGQLLEHLDCSGYPTRFEYDRRGNVKAIIDALGEHTRFHYDCQGRLLSSQLADGRAEHFQRSSNGQLQGYTDPSGYTTLYQYN RRGQIRQRIDAHGRQVRFDYDAYGRLLALTNENGESYRFAWDAGNRLSEQQDLDGSAKRYGYDLLNNVVELQSHPAPYGTGLSAVPAQPIAPIIHRFERD AVGRLLAKITDDGRSQYTYDPLNQLTAASFTDNLGNQQALSFSYDALGQLLEEHTVAGSLIHRYDELGNLTQTQLPDKRWLNRLYYGSGHLHQINLDGQV VSDFQRDRLHREVLRTQGQISTRSEYDRCGRLRARLQHSSLLANTLPTAPERHLEYDDSDNLVGLAERHATGQHRQLFHYDATGRIIASQDGLQGQKETF AYDAAANLLDGPKAGAGLVVHNKLLTYQDKRYRYDAFGRMIEKRSGRRGVQRFAYDAEHRLIEVRNQTSSGETLVRMRYDVLGRRISKSEYDSQGNLLGE TRFVWDGLRLLQEQRNQQTSLYVYEDLGHAPLARVDGLGAQQKIRYYHNDLNGLPQQLCEPDGHSVWQARYQVWGNTVEEIREPYYIEEQNLRFQGQYLD RETGLHFNTFRFYDPDIGRFTTPDPIGLAGGLNLYQYAPNPIGWIDPLGWICKSAYSGRRGTTKAKADLERNGFTVVGEELTMKVKHPVTQKSYRIRADI IAKDKAGNYHVFEVKNGSGKLTKNQQGSGMFDMSNPANTNGGLGGGLIKPSGATQGQFEVATKTARGTQFGGNGAQHSATFWLLRY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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