Pseudomonas protegens Pf-5, PFL_5227 (panB_1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_5227
Name
panB_1
Replicon chromosome
Genomic location 5986660 - 5987487 (+ strand)

Cross-References

RefSeq YP_262304.1
GI 70732541
EC Number 2.1.2.11
Entrez 3479628
INSDC AAY94446.1
NCBI Locus Tag PFL_5227
UniParc UPI000054DF4B
UniProtKB Acc Q4K629
UniProtKB ID PANB1_PSEF5
UniRef100 UniRef100_Q4K629
UniRef50 UniRef50_Q89MZ4
UniRef90 UniRef90_Q4K629

Product

Feature Type CDS
Coding Frame 1
Product Name
3-methyl-2-oxobutanoate hydroxymethyltransferase
Synonyms
Evidence for Translation
Charge (pH 7) -1.74
Kyte-Doolittle Hydrophobicity Value 0.098
Molecular Weight (kDa) 29512.8
Isoelectric Point (pI) 6.51

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 533 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003768 (344 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_5227
Search term: panB_1

Human Homologs

References

No references are associated with this feature.