Pseudomonas protegens Pf-5, PFL_3806 (rpmJ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_3806
Name
rpmJ
Replicon chromosome
Genomic location 4404770 - 4404919 (- strand)

Cross-References

RefSeq YP_260906.1
GI 70731165
Entrez 3476903
INSDC AAY93070.1
NCBI Locus Tag PFL_3806
UniParc UPI000054D9DD
UniProtKB Acc Q4KA27
UniProtKB ID RL36_PSEF5
UniRef100 UniRef100_Q4KA27
UniRef50 UniRef50_P28528
UniRef90 UniRef90_Q4KA27

Product

Feature Type CDS
Coding Frame 1
Product Name
50S ribosomal protein L36
Synonyms
Evidence for Translation
Charge (pH 7) 14.15
Kyte-Doolittle Hydrophobicity Value -1.153
Molecular Weight (kDa) 5.7
Isoelectric Point (pI) 12.12

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 205 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002074 (315 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_3806
Search term: rpmJ

Human Homologs

References

No references are associated with this feature.