Pseudomonas protegens Pf-5, PFL_3415

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_3415
Name
Replicon chromosome
Genomic location 3933614 - 3934651 (+ strand)

Cross-References

RefSeq YP_260520.1
GI 70730779
Entrez 3477645
INSDC AAY92684.1
NCBI Locus Tag PFL_3415
UniParc UPI000054D85D
UniProtKB Acc Q4KB63
UniProtKB ID Q4KB63_PSEF5
UniRef100 UniRef100_Q4KB63
UniRef50 UniRef50_F0Q3S4
UniRef90 UniRef90_Q4KB63

Product

Feature Type CDS
Coding Frame 1
Product Name
DNA topoisomerase I
Synonyms
Evidence for Translation
Charge (pH 7) 21.22
Kyte-Doolittle Hydrophobicity Value -0.588
Molecular Weight (kDa) 39179.5
Isoelectric Point (pI) 10.33

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 128 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003243 (493 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_3415

Human Homologs

References

No references are associated with this feature.