Pseudomonas protegens Pf-5, PFL_3415

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006265 DNA topological change
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00659
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00659
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF56349
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00416 Eukaryotic DNA topoisomerase I signature IPR001631 DNA topoisomerase I 242 256 4.4E-9
Gene3D G3DSA:3.90.15.10 Topoisomerase I; Chain A, domain 3 IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type 124 243 3.0E-89
Gene3D G3DSA:1.10.132.120 - - - 101 328 3.0E-89
Gene3D G3DSA:3.30.66.10 DNA topoisomerase I domain IPR035447 DNA topoisomerase I, N-terminal domain superfamily 15 98 1.1E-32
PRINTS PR00416 Eukaryotic DNA topoisomerase I signature IPR001631 DNA topoisomerase I 156 170 4.4E-9
SUPERFAMILY SSF56349 DNA breaking-rejoining enzymes IPR011010 DNA breaking-rejoining enzyme, catalytic core 89 325 7.06E-75
PRINTS PR00416 Eukaryotic DNA topoisomerase I signature IPR001631 DNA topoisomerase I 133 152 4.4E-9
CDD cd00659 Topo_IB_C IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type 96 307 7.53913E-74
SUPERFAMILY SSF55869 DNA topoisomerase I domain IPR035447 DNA topoisomerase I, N-terminal domain superfamily 33 94 6.8E-22
Pfam PF01028 Eukaryotic DNA topoisomerase I, catalytic core IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type 93 297 7.2E-32
PRINTS PR00416 Eukaryotic DNA topoisomerase I signature IPR001631 DNA topoisomerase I 177 193 4.4E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.