Pseudomonas protegens Pf-5, PFL_3199

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_3199
Name
Replicon chromosome
Genomic location 3683646 - 3685292 (- strand)

Cross-References

RefSeq YP_260304.2
GI 346642988
Entrez 3478112
INSDC AAY92468.2
NCBI Locus Tag PFL_3199
UniParc UPI000219FFF6
UniProtKB Acc Q4KBS9
UniProtKB ID Q4KBS9_PSEF5
UniRef100 UniRef100_Q4KBS9
UniRef50 UniRef50_Q9I2N0
UniRef90 UniRef90_Q4KBS9

Product

Feature Type CDS
Coding Frame 1
Product Name
VRR-NUC domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7) -5.03
Kyte-Doolittle Hydrophobicity Value -0.202
Molecular Weight (kDa) 63063.9
Isoelectric Point (pI) 6.40

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 34 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003538 (532 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_3199

Human Homologs

Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 1.4e-15
Percent Identity: 27.1
Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 1.4e-15
Percent Identity: 27.1
Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 1.4e-15
Percent Identity: 27.1
Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 1.4e-15
Percent Identity: 27.1
Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 1.4e-15
Percent Identity: 27.1
Ensembl 110, assembly GRCh38.p14
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value: 1.4e-15
Percent Identity: 27.1

References

No references are associated with this feature.