Pseudomonas protegens Pf-5, PFL_0830 (carA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas protegens Pf-5
GCF_000012265.1|latest
Locus Tag
PFL_0830
Name
carA
Replicon chromosome
Genomic location 958955 - 960091 (+ strand)

Cross-References

RefSeq YP_257965.1
GI 70734325
EC Number 6.3.5.5
Entrez 3481413
INSDC AAY96230.1
NCBI Locus Tag PFL_0830
UniParc UPI000054CE89
UniProtKB Acc Q4KIG8
UniProtKB ID Q4KIG8_PSEF5
UniRef100 UniRef100_Q4KIG8
UniRef50 UniRef50_P0A6F2
UniRef90 UniRef90_Q87WP3

Product

Feature Type CDS
Coding Frame 1
Product Name
carbamoyl phosphate synthase small subunit
Synonyms
Evidence for Translation
Charge (pH 7) -8.47
Kyte-Doolittle Hydrophobicity Value -0.117
Molecular Weight (kDa) 40.7
Isoelectric Point (pI) 5.58

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 625 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004402 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PFL_0830
Search term: carA

Human Homologs

Ensembl 110, assembly GRCh38.p14
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase [Source:HGNC Symbol;Acc:HGNC:1424]
E-value: 6.9e-62
Percent Identity: 38.9
Ensembl 110, assembly GRCh38.p14
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase [Source:HGNC Symbol;Acc:HGNC:1424]
E-value: 6.9e-62
Percent Identity: 38.9

References

No references are associated with this feature.