Pseudomonas protegens Pf-5, PFL_0830 (carA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006541 glutamine metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01368
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01368
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01368
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pfl00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pfl00250 Alanine, aspartate and glutamate metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc UMP biosynthesis II InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc L-arginine biosynthesis IV (archaebacteria) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG pfl01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc UMP biosynthesis III InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
MetaCyc UMP biosynthesis I InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature - - 264 280 6.6E-39
NCBIfam TIGR01368 JCVI: glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit IPR006274 Carbamoyl-phosphate synthase, small subunit 5 375 0.0
Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. IPR006274 Carbamoyl-phosphate synthase, small subunit 3 378 47.370937
Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain 7 132 7.8E-51
PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature - - 306 317 6.6E-39
SMART SM01097 CPSase_sm_chain_2 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain 3 133 2.5E-92
PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature - - 281 298 6.6E-39
PRINTS PR00096 Glutamine amidotransferase superfamily signature - - 236 245 7.2E-11
CDD cd01744 GATase1_CPSase IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain 194 371 4.43566E-110
Gene3D G3DSA:3.50.30.20 - IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily 2 151 4.3E-64
PRINTS PR00096 Glutamine amidotransferase superfamily signature - - 264 275 7.2E-11
PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature - - 233 247 6.6E-39
Gene3D G3DSA:3.40.50.880 - IPR029062 Class I glutamine amidotransferase-like 152 377 4.5E-81
FunFam G3DSA:3.40.50.880:FF:000011 Carbamoyl-phosphate synthase small chain - - 152 378 3.1E-128
SUPERFAMILY SSF52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily 4 141 4.97E-57
FunFam G3DSA:3.50.30.20:FF:000001 Carbamoyl-phosphate synthase small chain - - 2 151 1.2E-66
PRINTS PR00096 Glutamine amidotransferase superfamily signature - - 349 362 7.2E-11
PANTHER PTHR11405 CARBAMOYLTRANSFERASE FAMILY MEMBER - - 3 359 7.2E-56
Pfam PF00117 Glutamine amidotransferase class-I IPR017926 Glutamine amidotransferase 197 372 4.9E-45
SUPERFAMILY SSF52317 Class I glutamine amidotransferase-like IPR029062 Class I glutamine amidotransferase-like 153 376 1.83E-62
PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature - - 194 208 6.6E-39

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.