Pseudomonas savastanoi pv. phaseolicola 1448A, PSPPH_0245 (tex)

Gene Feature Overview

Strain	Pseudomonas savastanoi pv. phaseolicola 1448A GCF_000012205.1|latest
Locus Tag	PSPPH_0245
Name	tex
Replicon	chromosome
Genomic location	283619 - 285940 (- strand)

Cross-References

RefSeq	YP_272550.1
GI	71737579
Entrez	3559991
INSDC	AAZ37343.1
NCBI Locus Tag	PSPPH_0245
UniParc	UPI00005750ED
UniProtKB Acc	Q48PW9
UniProtKB ID	Q48PW9_PSE14
UniRef100	UniRef100_Q48PW9
UniRef50	UniRef50_Q45388
UniRef90	UniRef90_D7HUW6

Product

Feature Type	CDS
Coding Frame	1
Product Name	S1 RNA-binding domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7)	-4.71
Kyte-Doolittle Hydrophobicity Value	-0.291
Molecular Weight (kDa)	84579.7
Isoelectric Point (pI)	6.42

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 600 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004785 (532 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPPH_0245 Search term: tex Search term: S1 RNA-binding domain-containing protein

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000263736 S1 RNA binding domain 1 [Source:HGNC Symbol;Acc:HGNC:25521] E-value: 2.0e-100 Percent Identity: 33.3

References