Pseudomonas syringae pv. tomato DC3000, PSPTO_5425

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5425
NCBI Old Locus Tag	PSPTO5425
Name	Synonym: PSPTO5425
Replicon	chromosome
Genomic location	6166575 - 6169223 (- strand)

Cross-References

RefSeq	NP_795152.1
GI	28872533
Entrez	1187112
INSDC	AAO58847.1
NCBI Locus Tag	PSPTO_5425
NCBI Old Locus Tag	PSPTO5425
UniParc	UPI0000009695
UniProtKB Acc	Q87U82
UniProtKB ID	Q87U82_PSESM
UniRef100	UniRef100_Q87U82
UniRef50	UniRef50_A9FKV2
UniRef90	UniRef90_K0WZJ6

Product

Feature Type	CDS
Coding Frame	1
Product Name	clpB protein
Synonyms
Evidence for Translation
Charge (pH 7)	-19.31
Kyte-Doolittle Hydrophobicity Value	-0.101
Molecular Weight (kDa)	96.1
Isoelectric Point (pI)	5.21

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 597 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000089 (1168 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5425 Search term: clpB protein

Human Homologs

References