Pseudomonas syringae pv. tomato DC3000, PSPTO_5324 (secB)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_5324
NCBI Old Locus Tag	PSPTO5324
Name	secB Synonym: PSPTO5324
Replicon	chromosome
Genomic location	6052712 - 6053206 (- strand)

Cross-References

RefSeq	NP_795055.1
GI	28872436
Entrez	1187009
INSDC	AAO58750.1
NCBI Locus Tag	PSPTO_5324
NCBI Old Locus Tag	PSPTO5324
UniParc	UPI0000009639
UniProtKB Acc	Q87UH3
UniProtKB ID	SECB_PSESM
UniRef100	UniRef100_Q87UH3
UniRef50	UniRef50_Q48C90
UniRef90	UniRef90_Q48C90

Product

Feature Type	CDS
Coding Frame	1
Product Name	protein-export protein SecB
Synonyms
Evidence for Translation
Charge (pH 7)	-10.80
Kyte-Doolittle Hydrophobicity Value	-0.087
Molecular Weight (kDa)	18.2
Isoelectric Point (pI)	4.09

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 216 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004721 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_5324 Search term: secB Search term: protein-export protein SecB

Human Homologs

References