Pseudomonas syringae pv. tomato DC3000, PSPTO_5324 (secB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0015031 protein transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00809
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0051082 unfolded protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00809
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0051262 protein tetramerization
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00809
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pst03060 Protein export 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pst02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pst03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature IPR003708 Bacterial protein export chaperone SecB 81 101 2.0E-37
SUPERFAMILY SSF54611 SecB-like IPR035958 SecB-like superfamily 7 150 3.05E-53
PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature IPR003708 Bacterial protein export chaperone SecB 131 149 2.0E-37
NCBIfam TIGR00809 JCVI: protein-export chaperone SecB IPR003708 Bacterial protein export chaperone SecB 13 148 2.9E-54
Gene3D G3DSA:3.10.420.10 - IPR035958 SecB-like superfamily 2 160 1.7E-56
PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature IPR003708 Bacterial protein export chaperone SecB 21 38 2.0E-37
PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature IPR003708 Bacterial protein export chaperone SecB 105 127 2.0E-37
Pfam PF02556 Preprotein translocase subunit SecB IPR003708 Bacterial protein export chaperone SecB 13 151 2.2E-54
Hamap MF_00821 Protein-export protein SecB [secB]. IPR003708 Bacterial protein export chaperone SecB 1 153 32.865257
PANTHER PTHR36918 - IPR003708 Bacterial protein export chaperone SecB 1 158 1.4E-62

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.