Pseudomonas syringae pv. tomato DC3000, PSPTO_4822

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_4822
NCBI Old Locus TagPSPTO4822
Name
Synonym: PSPTO4822
Replicon chromosome
Genomic location 5459896 - 5460924 (- strand)

Cross-References

RefSeq NP_794556.1
GI 28871937
Entrez 1186505
INSDC AAO58251.1
NCBI Locus Tag PSPTO_4822
NCBI Old Locus Tag PSPTO4822
UniParc UPI000000944F
UniProtKB Acc Q87VW3
UniProtKB ID Q87VW3_PSESM
UniRef100 UniRef100_Q87VW3
UniRef50 UniRef50_Q9X6V6
UniRef90 UniRef90_S3N2F5

Product

Feature Type CDS
Coding Frame 1
Product Name
lipoprotein, rlpA family
Synonyms
Evidence for Translation
Charge (pH 7) 12.16
Kyte-Doolittle Hydrophobicity Value -0.318
Molecular Weight (kDa) 36.8
Isoelectric Point (pI) 10.11

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 349 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001683 (530 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4822

Human Homologs

References

No references are associated with this feature.