Pseudomonas syringae pv. tomato DC3000, PSPTO_4822
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGCCCGCGAGCAACAGGTCGATCCGCTGACCCTGAAAGGCTCGTATGCCGGCGCAATGGGCCTGCCGCAATTCATGCCGAGCAGCTTCCGCGCTTATG CAGTGGACTTTGACGGCGACGGTCACATCAACATCTGGACCGACCCGGACGACGCCATCGGCAGCGTGGCCAGCTATTTCAAGCGTCATGGCTGGGTGGC CGGCCAGCAGGTCGTCAGCCGCGCAACGGCGCGTGGCGACCGGGTTGATGAAGGCTTGAGCCCTGCACTTGATCCGGTAATGTCGGTCGGGGAGTTGCGA CAGCTGGGTTGGGCAAGTCATGATGCGCTGCGCGACGACATGCCGGTGACGGCATTCCGTCTTGAAGGCGACAATGGTCCCGAATACTGGCTGGGTCTGA ACAATTTTTATGCAATCACCCGTTATAACCGCAGTGTGATGTACGCCATGGCCGTGTATCAGCTGTCTGAATCGTTGGTTCAAGCTCGAGGCGTCAAGTA
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| DNA Sequence for Gene |
>PSPTO_4822
ATGCGGGCATCGCCGATTCTTCAATCATTCAAGCTTCTGGCGTTGACTGGCCTGGCAGTGCTGGTCGCCAGTTGCTCGTCGCCGTCACGCACAACGTCGT CGCAGTCGCCAAAAGGCGGTGCAGTTGTACGCACCATGCCGGGCCTGGACATCAACCGTGCTCACAAGGACGGCGCGCCGTGGTGGGACGTGGATGTTTC GCGCATCCCCGATGCCACGCCGACCCTGCACACCGGGGCCTACAAGGCCAACCCGTACACCGTGCTGGGCAAGACCTATTTCCCCATGAGCGATTCCAGG CGCTACGTCGCTTCGGGCACCGCCTCCTGGTATGGCACCAAGTTTCATGGCCAGAACACCGCCAATGGCGAGGTTTACGACCTGTACGGCATGAGTGCCG CGCACAAGACCCTGCCGCTGCCCAGCTACGTCAAAGTGACCAACCTGGACAACAACCGCACGGTGATTCTGCGGGTCAACGACCGTGGGCCGTTTTATTC GGACCGCATCATCGACCTGTCCTACGCCGCCGCCAAAAAGCTCGGTTACGCCGAAAGCGGCACTGCGCGGGTCAAGGTCGAAGGTATCGACCCGCAGGAA TGGTGGGCGCAACGTGGCCGTCCGGCACCGCTGATGCTCAATCAGCCACAAGTGATGGCCCAGGCAACACCGCCAGCGCTGTCCACTTCCACCGGCACCG TCGAACAATACACACCGCCACCCCAGCAGCACGCTGCACCTGTCGTGCCGTTGCAGGTTGACGCAAAAAAAAACGCTTCAGGACAAGCCGCTGGGCTGTT TCTCCAGGTGGGAGCCTTCGCCAACCCGGACGCTGCGGAGCTCCTGAGGTCGAAACTGAGCGGGATGGTTCGAGCGCCGGTGTTCGTCAGCTCGATCGCT CGCAATCAGCAAACGCTCTATCGGGTCCGGATGGGACCGATCGACACGCCGGGTGAAGCCCAGCAGCTGCAAAACAGCGTCAGGTCGGCCAATCTGGGCC AGCCGAGCGTAGTGACATCGGATCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTTTTTCGACAGTCGCCTTCCGGCAGCAGTGGAGGGCGAGATGCAGTCGCAGGCGGCGCAGCTTTGCCAGCAGGGCAAGCGTTGCAGGTAACTGCCCACA AGGTCGTGTGTCGAACCGGCGACTTTGTCAGCCAGGGTTACAGCCTGGCGCCACGAGCCGTACCGAGGCGCTTTCGCCTCGCCGGTCTGTTCAGTTTTGC CCGCAAGGGCATGTTTGCCCATTAGGATTCTCGAGAGACGGATGAACATCACCACCTTTGCAAAACGTTTGTGCCTGCTTGTTCCACTGATTATCACCCC GGCTGCCTGGGCTGCGGAGCAGATGACGCCTGCCGCACCGCAACTGGCCGCCAAGTCCTACGTGCTGATGGACGCTACCAGCGGCAACGTTCTGGTCGAG AACAACGGTGATCAGCGTCTGGCGCCTGCCAGCCTGACCAAGCTGATGACTGCCTACATCGCGACCCTGGAAATCCGTCGTGGCCAGATCGGTGAAAACG
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| Amino Acid Sequence |
>lipoprotein, rlpA family
MRASPILQSFKLLALTGLAVLVASCSSPSRTTSSQSPKGGAVVRTMPGLDINRAHKDGAPWWDVDVSRIPDATPTLHTGAYKANPYTVLGKTYFPMSDSR RYVASGTASWYGTKFHGQNTANGEVYDLYGMSAAHKTLPLPSYVKVTNLDNNRTVILRVNDRGPFYSDRIIDLSYAAAKKLGYAESGTARVKVEGIDPQE WWAQRGRPAPLMLNQPQVMAQATPPALSTSTGTVEQYTPPPQQHAAPVVPLQVDAKKNASGQAAGLFLQVGAFANPDAAELLRSKLSGMVRAPVFVSSIA RNQQTLYRVRMGPIDTPGEAQQLQNSVRSANLGQPSVVTSDQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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