Pseudomonas syringae pv. tomato DC3000, PSPTO_1081 (rfbB-1)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1081
NCBI Old Locus Tag	PSPTO1081
Name	rfbB-1 Synonym: PSPTO1081
Replicon	chromosome
Genomic location	1185470 - 1186543 (- strand)

Cross-References

RefSeq	NP_790915.1
GI	28868296
Entrez	1182716
INSDC	AAO54610.1
NCBI Locus Tag	PSPTO_1081
NCBI Old Locus Tag	PSPTO1081
UniParc	UPI0000008692
UniProtKB Acc	Q888E5
UniProtKB ID	Q888E5_PSESM
UniRef100	UniRef100_Q888E5
UniRef50	UniRef50_D5AL85
UniRef90	UniRef90_Q888E5

Product

Feature Type	CDS
Coding Frame	1
Product Name	dTDP-glucose 4,6-dehydratase
Synonyms
Evidence for Translation
Charge (pH 7)	-12.51
Kyte-Doolittle Hydrophobicity Value	-0.479
Molecular Weight (kDa)	40.4
Isoelectric Point (pI)	5.38

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 643 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004752 (533 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1081 Search term: rfbB-1 Search term: dTDP-glucose 4,6-dehydratase

Human Homologs

References