Pseudomonas syringae pv. tomato DC3000, PSPTO_1081 (rfbB-1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008460 dTDP-glucose 4,6-dehydratase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01181
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009225 nucleotide-sugar metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01181
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pst01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pst00521 Streptomycin biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pst00523 Polyketide sugar unit biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pst01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pst00525 Acarbose and validamycin biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01181 JCVI: dTDP-glucose 4,6-dehydratase IPR005888 dTDP-glucose 4,6-dehydratase 2 336 0.0
Gene3D G3DSA:3.40.50.720 - - - 2 322 0.0
FunFam G3DSA:3.40.50.720:FF:000108 dTDP-glucose 4,6-dehydratase - - 3 210 1.8E-96
Gene3D G3DSA:3.90.25.10 - - - 200 331 0.0
CDD cd05246 dTDP_GD_SDR_e IPR005888 dTDP-glucose 4,6-dehydratase 1 333 0.0
PANTHER PTHR43000 DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED - - 2 340 1.7E-118
SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains IPR036291 NAD(P)-binding domain superfamily 1 334 2.19E-95
Pfam PF16363 GDP-mannose 4,6 dehydratase IPR016040 NAD(P)-binding domain 4 324 7.4E-99

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.