Pseudomonas syringae pv. tomato DC3000, PSPTO_0563

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0563
NCBI Old Locus Tag	PSPTO0563
Name	Synonym: PSPTO0563
Replicon	chromosome
Genomic location	618732 - 619766 (+ strand)

Cross-References

RefSeq	NP_790410.1
GI	28867791
Entrez	1182173
INSDC	AAO54105.1
NCBI Locus Tag	PSPTO_0563
NCBI Old Locus Tag	PSPTO0563
UniParc	UPI00000084A8
UniProtKB Acc	Q88A34
UniProtKB ID	Q88A34_PSESM
UniRef100	UniRef100_Q88A34
UniRef50	UniRef50_I3UHC8
UniRef90	UniRef90_Q88A34

Product

Feature Type	CDS
Coding Frame	1
Product Name	polyamine ABC transporter periplasmic polyamine-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	-3.09
Kyte-Doolittle Hydrophobicity Value	-0.266
Molecular Weight (kDa)	37.6
Isoelectric Point (pI)	5.12

Subcellular localization

Individual Mappings	Localization Confidence PMID Periplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 191 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000587 (511 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0563 Search term: polyamine ABC transporter periplasmic polyamine-binding protein

Human Homologs

References