Pseudomonas lutea DSM 17257, LT42_RS20350

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas lutea DSM 17257
GCF_000759445.1|latest
Locus Tag
LT42_RS20350
NCBI Old Locus TagLT42_20955
Name
Synonym: LT42_20955
Replicon Contig002
Genomic location 1837584 - 1838906 (- strand)

Cross-References

RefSeq WP_037016972.1
GI 739152603
INSDC KGF64337.1
NCBI Locus Tag LT42_RS20350
NCBI Old Locus Tag LT42_20955
UniParc UPI00051326B9
UniProtKB Acc A0A098SWR7
UniProtKB ID A0A098SWR7_9PSED
UniRef100 UniRef100_A0A098SWR7
UniRef50 UniRef50_Q88B41
UniRef90 UniRef90_A0A098SWR7

Product

Feature Type CDS
Coding Frame 1
Product Name
16S rRNA methyltransferase
Synonyms
Evidence for Translation
Charge (pH 7) 0.94
Kyte-Doolittle Hydrophobicity Value -0.078
Molecular Weight (kDa) 47.5
Isoelectric Point (pI) 7.22

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000017 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: LT42_RS20350

Human Homologs

Ensembl 110, assembly GRCh38.p14
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value: 1.3e-27
Percent Identity: 34.2
Ensembl 110, assembly GRCh38.p14
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value: 1.3e-27
Percent Identity: 34.2
Ensembl 110, assembly GRCh38.p14
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value: 1.3e-27
Percent Identity: 34.2
Ensembl 110, assembly GRCh38.p14
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value: 1.3e-27
Percent Identity: 34.2
Ensembl 110, assembly GRCh38.p14
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value: 1.3e-27
Percent Identity: 34.2
Ensembl 110, assembly GRCh38.p14
NOP2 nucleolar protein [Source:HGNC Symbol;Acc:HGNC:7867]
E-value: 1.3e-27
Percent Identity: 34.2

References

No references are associated with this feature.