| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas lutea DSM 17257 |
| Species | Pseudomonas lutea |
| Strain | DSM 17257 |
| Description/Title | Pseudomonas lutea DSM 17257 |
| Annotated Genes | 4961 |
| Partial Genes | 229 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Spain |
| Isolation Source | Rhizospheric soil of grasses |
| Sample Provider | |
|---|---|
| Name | Shin's Lab. |
| yun@knu.ac.kr | |
| Institution | Kyungpook National University |
| Date Collected | 2004 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | |
| Assembly Status | latest |
| Scaffolds | |
| Contigs | 5 |
| Contig N50 | 2839280 |
| Assembly Level | Contig |
| Percent GC | |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03077637 |
| NCBI Taxonomy ID | 243924 |
| NCBI Bioprojects | |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information | |
| Feature | Count |
|---|---|
| gene | 4939 |
| CDS | 4844 |
| tRNA | 70 |
| rRNA | 24 |
| pseudo | 22 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2136 |
| Unknown | 1166 |
| Cytoplasmic Membrane | 1138 |
| Periplasmic | 154 |
| Unknown (This protein may have multiple localization sites) | 114 |
| Outer Membrane | 91 |
| Extracellular | 45 |
| Flagellar | 18 |
| Fimbrial | 3 |
| T3SS | 2 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |