Pseudomonas chlororaphis EA105, NZ35_RS06260

Gene Feature Overview

Strain	Pseudomonas chlororaphis EA105 GCF_000783395.1|latest
Locus Tag	NZ35_RS06260
NCBI Old Locus Tag	NZ35_06260
Name	Synonym: NZ35_06260
Replicon	contig_2
Genomic location	525359 - 525916 (+ strand)

Cross-References

RefSeq	WP_038359601.1
GI	740573800
INSDC	KHA74672.1
NCBI Locus Tag	NZ35_RS06260
NCBI Old Locus Tag	NZ35_06260
UniParc	UPI000536CF81
UniProtKB Acc	A0A0A6DIX8
UniProtKB ID	A0A0A6DIX8_9PSED
UniRef100	UniRef100_A0A0A6DIX8
UniRef50	UniRef50_Q88RQ9
UniRef90	UniRef90_G8PX86

Product

Feature Type	CDS
Coding Frame	1
Product Name	tRNA threonylcarbamoyladenosine biosynthesis protein RimN
Synonyms
Evidence for Translation
Charge (pH 7)	1.65
Kyte-Doolittle Hydrophobicity Value	-0.203
Molecular Weight (kDa)	20.7
Isoelectric Point (pI)	8.24

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000022 (537 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: NZ35_RS06260 Search term: tRNA threonylcarbamoyladenosine biosynthesis protein RimN

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000362135 yrdC N6-threonylcarbamoyltransferase domain containing [Source:HGNC Symbol;Acc:HGNC:28905] E-value: 3.2e-12 Percent Identity: 29.8

References