Pseudomonas sp. FH4, H097_RS24040

Gene Feature Overview

Strain	Pseudomonas sp. FH4 - Assembly GCF_000510915.2 GCF_000510915.2|latest
Locus Tag	H097_RS24040
NCBI Old Locus Tag	H097_02807
Name	Synonym: H097_02807
Replicon	scf_29086_4.1_contig_1
Genomic location	34613 - 35170 (- strand)

Cross-References

RefSeq	WP_032857133.1
GI	696281205
INSDC	ETK20890.1
NCBI Locus Tag	H097_RS24040
NCBI Old Locus Tag	H097_02807
UniParc	UPI0003DD6058
UniProtKB Acc	W2DN48
UniProtKB ID	W2DN48_9PSED
UniRef100	UniRef100_W2DN48
UniRef50	UniRef50_Q88B46
UniRef90	UniRef90_Q4KKQ6

Product

Feature Type	CDS
Coding Frame	1
Product Name	tRNA threonylcarbamoyladenosine biosynthesis protein RimN
Synonyms
Evidence for Translation
Charge (pH 7)	0.65
Kyte-Doolittle Hydrophobicity Value	-0.216
Molecular Weight (kDa)	20.7
Isoelectric Point (pI)	7.52

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000022 (537 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: H097_RS24040 Search term: tRNA threonylcarbamoyladenosine biosynthesis protein RimN

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000362135 yrdC N6-threonylcarbamoyltransferase domain containing [Source:HGNC Symbol;Acc:HGNC:28905] E-value: 1.6e-11 Percent Identity: 29.0

References