Pseudomonas sp. FH4, H097_RS25275

Gene Feature Overview

Strain	Pseudomonas sp. FH4 - Assembly GCF_000510915.2 GCF_000510915.2|latest
Locus Tag	H097_RS25275
NCBI Old Locus Tag	H097_01527
Name	Synonym: H097_01527
Replicon	scf_29086_2.1_contig_1
Genomic location	152121 - 153617 (- strand)

Cross-References

RefSeq	WP_032856774.1
GI	696280840
INSDC	ETK21199.1
NCBI Locus Tag	H097_RS25275
NCBI Old Locus Tag	H097_01527
UniParc	UPI0003DD6A95
UniProtKB Acc	W2DPD7
UniProtKB ID	W2DPD7_9PSED
UniRef100	UniRef100_W2DPD7
UniRef50	UniRef50_Q4K3N7
UniRef90	UniRef90_Q4K3N7

Product

Feature Type	CDS
Coding Frame	1
Product Name	EvpB family type VI secretion protein
Synonyms
Evidence for Translation
Charge (pH 7)	-13.27
Kyte-Doolittle Hydrophobicity Value	-0.452
Molecular Weight (kDa)	55.6
Isoelectric Point (pI)	5.18

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
5N8N	STRUCTURAL PROTEIN	02/23/17	Contracted sheath of a Pseudomonas aeruginosa type six secretion system consisting of TssB1 and TssC1	Pseudomonas aeruginosa	3.28	ELECTRON MICROSCOPY	93.1

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000083 (1225 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: H097_RS25275 Search term: EvpB family type VI secretion protein

Human Homologs

References