Pseudomonas putida S16, PPS_2505
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas putida S16
GCF_000219705.1|latest |
| Locus Tag |
PPS_2505
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 2804535 - 2806184 (+ strand) |
Cross-References
| RefSeq | YP_004701944.1 |
| GI | 339487416 |
| Entrez | 10938147 |
| NCBI Locus Tag | PPS_2505 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
VRR-NUC domain-containing protein
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -8.04 |
| Kyte-Doolittle Hydrophobicity Value | -0.228 |
| Molecular Weight (kDa) | 62925.5 |
| Isoelectric Point (pI) | 6.23 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 34 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG003538 (532 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PPS_2505
Search term: VRR-NUC domain-containing protein
|
Human Homologs
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
1.2e-17
Percent Identity:
31.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
1.2e-17
Percent Identity:
31.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
1.2e-17
Percent Identity:
31.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
1.2e-17
Percent Identity:
31.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
1.2e-17
Percent Identity:
31.8
|
|
Ensembl
110, assembly
GRCh38.p14
|
FANCD2 and FANCI associated nuclease 1 [Source:HGNC Symbol;Acc:HGNC:29170]
E-value:
1.2e-17
Percent Identity:
31.8
|
References
No references are associated with this feature.