Pseudomonas fluorescens F113, PSF113_5433 (soxD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas fluorescens F113
GCF_000237065.1|latest
Locus Tag
PSF113_5433
Name
soxD
Replicon chromosome
Genomic location 6284935 - 6285264 (- strand)

Cross-References

RefSeq YP_005210800.1
GI 378953312
EC Number 1.5.3.1
Entrez 11833552
INSDC AEV65405.1
NCBI Locus Tag PSF113_5433
UniParc UPI00023B42D9
UniProtKB Acc G8Q2D5
UniProtKB ID G8Q2D5_PSEFL
UniRef100 UniRef100_G8Q2D5
UniRef50 UniRef50_C5B1G1
UniRef90 UniRef90_Q4K4P8

Product

Feature Type CDS
Coding Frame 1
Product Name
protein SoxD
Synonyms
Evidence for Translation
Charge (pH 7) -5.45
Kyte-Doolittle Hydrophobicity Value -0.728
Molecular Weight (kDa) 12.6
Isoelectric Point (pI) 5.48

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 72 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004971 (511 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSF113_5433
Search term: soxD
Search term: protein SoxD

Human Homologs

References

No references are associated with this feature.