Pseudomonas fluorescens F113, PSF113_5433 (soxD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens F113 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCCCACCCGCTGCAAGCGCTGGTGTCCGAGCCGATCAAGCCGATCATCGACAGCGTGATCATGTCCAACGCCGTGCACGGCTACATCAGCCAGTCCGACA AGGGTGACCTGGTGATCGGTGCCGGTATCGACGGCTACAACGGCTACGGCCAGCGTGGCTCCTACCCAGTGATCGAACACACAGTCCAGGCCATCGTCGA GATGTTCCCGGTGTTGTCCCGCGTACGCATGAACCGCCAGTGGGGCGGCATCGTCGACACCACGCCGGACGCCTGCCCGATCATCTCCAAGACCCCGGTG CCGAACATGTTCTTCAACTGCGGTTGGGGCACCGGCGGCTTCAAGGCGACACCTGGCTCGGGCAACGTATTTGCCGCGAGCCTGGCCAAGGGTGAAATGC ACCCCTTGGCCGCACCTTTCTCCATCGACCGTTTCCACAACGGTGCGTTGATCGATGAACACGGCGCTGCTGCGGTTGCCCACTAACAGGAGAAATCCCC
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| DNA Sequence for Gene |
>PSF113_5433
|soxD
ATGTTGCACATCTTCTGTCCTCACTGCGGCGAACTGCGCTCCGAAGAGGAATTCCATGCATCCGGCCAGGCGCACATCCCGCGTCCGCTGGATCCGAACG CCTGCACCGACGAGGAGTGGGGCGATTACATGTTCTTCCGTGACAACCCACGCGGGTTGCACCACGAACTGTGGGATCACGTCGCCGGTTGCCGCCAGTA CTTCAACGTGACCCGCGACACCGTGACCTACGAGATTCTCGAAACGTACAAGATCGGCCAAAAGCCGCAATTCACCGACAAGGCTGACAGTCCGAAAGCG GCCGCACAGGCTCTGGGAGAGAAGGTATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCAGATCAATCGCCTGTCCAACGGTGGACGGATCGACCGCAACAAAGCGCTGAGCTTCACCTTCAACGGCCAGACCTACAAAGGCTTCGAGGGCGATTC CCTGGCCGCTGCGCTGCTGGCCAACGGTGTCGACATCATCGGCCGCAGTTTCAAATATTCGCGTCCGCGCGGTATTTACGCCGCCGGTGCCGAAGAACCG AACGCAGTGCTGCAGATCGGCGCCACCGAAGCCACGCAAATCCCTAACGTGCGCGCCACGCAACAGGCGCTGTACCAGGGTTTGGTCGCCACCAGCACCA ACGGCTGGCCGAACGTGAACAACGACATGATGGGGATTCTCGGCAAGGTCGGCGGCAAGCTGATGCCGCCGGGCTTCTACTACAAAACCTTCATGTACCC GCAATCGTTCTGGATGACCTACGAGAAGTACATCCGCAAGGCTGCCGGCCTGGGTCGCTCGCCGACCGAGAACGATCCGGACACCTACGACTACATGAAC
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| Amino Acid Sequence |
>protein SoxD
MLHIFCPHCGELRSEEEFHASGQAHIPRPLDPNACTDEEWGDYMFFRDNPRGLHHELWDHVAGCRQYFNVTRDTVTYEILETYKIGQKPQFTDKADSPKA AAQALGEKV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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