Pseudomonas sp. GM30, PMI25_003890

Gene Feature Overview

Strain	Pseudomonas sp. GM30 GCF_000282275.2|latest
Locus Tag	PMI25_003890
Name
Replicon	ctg12
Genomic location	147268 - 148140 (- strand)

Cross-References

RefSeq	WP_007967487.1
GI	495242724
INSDC	EUB87611.1
NCBI Locus Tag	PMI25_003890
UniParc	UPI0002700C58
UniProtKB Acc	W6VRW1
UniProtKB ID	W6VRW1_9PSED
UniRef100	UniRef100_W6VRW1
UniRef50	UniRef50_G8Q4Y5
UniRef90	UniRef90_G8Q4Y5

Product

Feature Type	CDS
Coding Frame	1
Product Name	amino acid ABC transporter ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	-2.47
Kyte-Doolittle Hydrophobicity Value	0.077
Molecular Weight (kDa)	32.1
Isoelectric Point (pI)	6.40

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004529 (504 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PMI25_003890 Search term: amino acid ABC transporter ATP-binding protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000442634 ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638] E-value: 7.7e-13 Percent Identity: 24.6
Ensembl 110, assembly GRCh38.p14	ENSP00000411096 ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638] E-value: 7.7e-13 Percent Identity: 24.6
Ensembl 110, assembly GRCh38.p14	ENSP00000396789 ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638] E-value: 7.7e-13 Percent Identity: 24.6

References