Pseudomonas sp. HPB0071, HMPREF1487_06113

Gene Feature Overview

Strain	Pseudomonas sp. HPB0071 GCF_000478505.2|latest
Locus Tag	HMPREF1487_06113
NCBI Locus Tag	HMPREF1487_RS08945
Name
Replicon	scaffold_1
Genomic location	1895192 - 1897252 (+ strand)

Cross-References

RefSeq	WP_010796309.1
GI	498495577
INSDC	ENA33947.1
NCBI Locus Tag	HMPREF1487_RS08945
NCBI Old Locus Tag	HMPREF1487_06113
UniParc	UPI0002CBD5A7
UniProtKB Acc	N2J2V0
UniProtKB ID	N2J2V0_9PSED
UniRef100	UniRef100_N2J2V0
UniRef50	UniRef50_Q9HYC3
UniRef90	UniRef90_N2J2V0

Product

Feature Type	CDS
Coding Frame	1
Product Name	type VI secretion system Vgr family protein
Synonyms
Evidence for Translation
Charge (pH 7)	-15.77
Kyte-Doolittle Hydrophobicity Value	-0.595
Molecular Weight (kDa)	77.3
Isoelectric Point (pI)	6.10

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000090 (3342 members)
Putative Inparalogs	2 predicted inparalogs type VI secretion system Vgr family protein (HMPREF1487_06090) 90.4% identity type VI secretion system Vgr family protein (HMPREF1487_06090) 90.4% identity

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: HMPREF1487_06113 Search term: type VI secretion system Vgr family protein

Human Homologs

References