Pseudomonas sp. HPB0071, HMPREF1487_06113
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. HPB0071 genomic scaffold aczIi-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGACCTCCGGCGAGCGCCTGAGCAAGTGCCGCCTGGAGTGGTACCGCACTTCTGCTACTGGTACTCAGGAACACTACTTCACCATCGAGCTGGAAGACG CCATCATCGTTGACGTGCAGTCCCGCATGCCGAACTGCCAGGACCCGAACATGGCTCATTTCACTCACCTGGAAGACGTGTACTTCACGTACCGCAAGAT CGTCTGGACTCACGAAGTATCCGGCACTTCCGGCTCCGACGACTGGCGCTCCCCGATCTCCGCTTAATTTCGCGGCGATCCGTCAGACAGGTGTGAATCG GTGTCGGCTTCTGATCCCCTCCAGAAGCCGATTGGTCAGAAACAGACCCGAATCACTGCCTGCTAACCGCTTGAGGTGGCACAATGAGTCAAGCGCCATG ATGTCTGGCATTGGCTCATTCCATGCTAGTACGGTTAGCCTTTTCGGCCAGGTCTCCTGGCCGAAATTGTTTTCGCAACAACCTTCTGGAGGAACACGGA
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| DNA Sequence for Gene |
>HMPREF1487_06113
ATGTTCAACCCAGCGAATACTGCTCATTTTTCGCTATCCATTCACGGATCGACTTCAGAAGGAGAGATGCCTGACTTTCAGGTTCTGAGCTTTACAGGAC AGGAGTCGATCAGCCAGCCCTTTCGTTTTGACCTCGAACTGGTCAGCGAACGCCCCGACCTCGACCTTGAGGCCCTGCTGCATCAGCGCGCCTTTCTGGC CTTCTCGCCCAGCGGTAACGGCGTGCATGGTCAGCTCTACCAGATCGGCCAGGGCGATGCCGGCAAGCGCCTGACCCGCTATCACGTTGTGCTAGTGCCG CGTCTGGCCTACCTTGCGCACCGCACCAATCAGCGCATCTTTCAAAAGCTCACCGTCCCGCAGATCATCGCCCAGGTGCTAGAAGATCACGGCATCCTGG CGGACGCCTACCGCTTCCAGCTGGGGCCTACGGTCTATCCGCCTCGCGAGTATTGCGTCCAGTACGATGAGACCGACCTGCACTTCATTCAGCGGCTCTG CGAAGAGGAAGGCCTGCACTACCACTTCGAGCATACCCAGGATAACCACGTCCTGGTGTTTGGTGATGACCAGACCGGCTTTCCCAGGCTGACCCCATCC ACCGCCTATGTGCAGGGCTCCGGTCTGGTGGCAGACGAGCCGGTGGTCAAACGCTTTGGCGTACGCCTGGAAACCCGTACCGCCCGTGTCTCGCGCCGCG ACTATGACTTCGAGCAACCGCGACTGCGCATGGAGGCCGCCTACAAGAGCGAGGCCAAGCCCGATCTGGAAGACTACGACTACCCAGGTCGCTTTACCGA TCGCACCCGCGGCAAGCACCTCGCCCAGCGCGCCCTTGAGCGTCACCGCAGCGACTATCAGCTGGCCGAAGGTGAAAGCGATCAACCCCAGCTGGTGACC GGCCACTTCCTGGAACTGTCCGAGCATCCCCGCCGTGACTGGAACCAGCTCTGGCTACTCACCGGCATTTGGCATGAGGGCAAGCAGCCCCAGGTGCTGG AAGAGTCGGTTACCAGCGATGTGGACAAGCACGACGGCTTTACCCAGGGCTACCGCAACCGCTTCACAGCGACGCCCTGGGACGTACCCTTCCGTCCTGC GCTTGAGCATCCCAAGCCCAAGATCCTGGGCAGCCAGACCGCGGTGGTCACTGGACCCAAGGGCGAAGAGATCCATTGCGATGAGTACGGTCGGGTCAAG GTGCAGTTTCATTGGGACCGTGAAGGCCAGGCCAACGAACAGACCAGCTGCTGGCTACGCGTCTCGTCCAGCTGGGCGGGCGATCGTTATGGCGGTATCG CCATTCCTCGCATCGGCATGGAGGTACTGGTCACGTTCTTGGAAGGCGACCCGGACCAGCCCCTGGTCACGGGCTGCTTGTTCCACATGGAACATCAGGT TCCCTATGACCTGCCGGCCAACAAGACCCGCAGCGTCTTCAAGACCCTGAGCACACCGGGTGGTGGTGGCTATAACGAGCTGCGTATCGAGGATAAGAAA GGTCAGGAACAGATTTACATTCACGCCCAACGGGACTGGGACGAGAACGTCGAGCACGACCAGAAGATCCGCGTAGGACACGAGCGACACGACATTGTCG AGGCTAACAGCTACACGGAATACAAAGCCGAGGAACACCGCACCACGGATGCAGACCGCAAGGTTGAGATCAAGACCAACGACCACCTCACCATCGGGCA AAACCAGCATATCAAGATCGGTACAGGTCAGTTCGTCAGTGCGGGGCAGGAAATCCATTTATCCAGTGGTTTGAAGGTTGTTTTGGAGGCTGGCAGCGAA CTTACCTTCAAGGCAGGCGGTAGCTTCATCAAGCTGGACGCCAGCGGCATCACTATCGTCGGCCCAACGGTCCGCATCAACTCTGGAGGCAACGCAGGCA GCGGAACCGGTGCATCCCCTCTGCTGCCGGGGCCTGTAAGGCCAGCCGACGTAGATAAGGCAGGTGCTCTGCTAACACCCGCACAGATCAATACCTTCAA GCGTAACGCACCCTTCTGTGAAGAATGCGAAAAGTGCAAGGAGGGGTTCTGTGCGCTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAATTTGCTTACCCCTCAAGAGTGGTTGGCTCAACAGTCAACTGATAACTCATCCCTTTATGTCGTGATGAGTAACACCAGCGATGCCAATCCACTGAAG GCCTATTACGAAGCTCGTGAAGCTTTTGTCCCTTTGCCCATTTGGGAAGGTACCCCCTACGCTGACTGGCAGCCGGTGATGCCCTACCTAGGTAGGCTCA GCCCAAACAGCACATTTTTAAATTGGGCAGCTCAAGAAAAACATAAAGACTGGGGATGGCTAGCCCTAGCCACGCACGAGCCAGCAGCTATCGTCGAGCA CCTCAAGAGTCTGACCAAAGTCTTTATGCCAGACGGTAGCGAAGTGTTTTTCCGCTTTTGGGATGGTCGGCATCTGGTCCCTGTGATTCAGACCCTGAAT CAGCAGTTCTCTACCGTATTACCTTGCTTCGATCAGTACTGGGTTAATCAATTCAACGCCAGCATAACCCCAAGTACTTACCAAATCGCTCGAACATACC
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| Amino Acid Sequence |
>type VI secretion system Vgr family protein
MFNPANTAHFSLSIHGSTSEGEMPDFQVLSFTGQESISQPFRFDLELVSERPDLDLEALLHQRAFLAFSPSGNGVHGQLYQIGQGDAGKRLTRYHVVLVP RLAYLAHRTNQRIFQKLTVPQIIAQVLEDHGILADAYRFQLGPTVYPPREYCVQYDETDLHFIQRLCEEEGLHYHFEHTQDNHVLVFGDDQTGFPRLTPS TAYVQGSGLVADEPVVKRFGVRLETRTARVSRRDYDFEQPRLRMEAAYKSEAKPDLEDYDYPGRFTDRTRGKHLAQRALERHRSDYQLAEGESDQPQLVT GHFLELSEHPRRDWNQLWLLTGIWHEGKQPQVLEESVTSDVDKHDGFTQGYRNRFTATPWDVPFRPALEHPKPKILGSQTAVVTGPKGEEIHCDEYGRVK VQFHWDREGQANEQTSCWLRVSSSWAGDRYGGIAIPRIGMEVLVTFLEGDPDQPLVTGCLFHMEHQVPYDLPANKTRSVFKTLSTPGGGGYNELRIEDKK GQEQIYIHAQRDWDENVEHDQKIRVGHERHDIVEANSYTEYKAEEHRTTDADRKVEIKTNDHLTIGQNQHIKIGTGQFVSAGQEIHLSSGLKVVLEAGSE LTFKAGGSFIKLDASGITIVGPTVRINSGGNAGSGTGASPLLPGPVRPADVDKAGALLTPAQINTFKRNAPFCEECEKCKEGFCAL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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