Pseudomonas sp. HPB0071, HMPREF1487_06085

Gene Feature Overview

Strain	Pseudomonas sp. HPB0071 GCF_000478505.2|latest
Locus Tag	HMPREF1487_06085
NCBI Locus Tag	HMPREF1487_RS08805
Name
Replicon	scaffold_1
Genomic location	1861171 - 1862502 (+ strand)

Cross-References

RefSeq	WP_010796281.1
GI	498495548
INSDC	ENA34425.1
NCBI Locus Tag	HMPREF1487_RS08805
NCBI Old Locus Tag	HMPREF1487_06085
UniParc	UPI0002CB1DD9
UniProtKB Acc	N2JAT6
UniProtKB ID	N2JAT6_9PSED
UniRef100	UniRef100_N2JAT6
UniRef50	UniRef50_Q9I358
UniRef90	UniRef90_N2JAT6

Product

Feature Type	CDS
Coding Frame	1
Product Name	type VI secretion protein
Synonyms
Evidence for Translation
Charge (pH 7)	-4.78
Kyte-Doolittle Hydrophobicity Value	-0.220
Molecular Weight (kDa)	49.9
Isoelectric Point (pI)	6.51

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000078 (854 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: HMPREF1487_06085 Search term: type VI secretion protein

Human Homologs

References