Pseudomonas sp. HPB0071, HMPREF1487_06085
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. HPB0071 genomic scaffold aczIi-supercont1.1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGATTTTCAAGGATGAAACCCATGATCCGCTTCGCTCCCCTGGCCCTGCTGGCCGCCATGACCCTGACAGGCTGCTCGTCCCTGAGCTCCGATATGTCC AAGCTCGACCTGAGCCTGTCGGGTAGCGATACCCTGAACCCGGACCTCAATGGTCGTCCCTCGCCTATCGTGATCCGCCTGATCGAACTCAAGCATCCGG TTGCCTTCCAGAACGCGGATTTCTTCTCGCTATACGAGCGCCCGCGCGAAGCGCTGTCGCCGGATCTAGTCGCCTCCGAAGAGATCGAGCTGCGCCCGGG CGAGAAACGTGACCTGAAATTATCCGTCCAGAACGATAGCCGCTATGTTGGTGTGCTGGCGGCGTACCGTGATCTACCGGAAACCCAATGGCGCTACGTG ATTGAAGTTCCGGCCAAGCAGATCACCCGTGCGGATCTATCCCTGGATGCCGAAGGCATTCACTCCGCCGCGCCTGAAAAAAAGGCCAAGGACTGATCCC
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| DNA Sequence for Gene |
>HMPREF1487_06085
ATGACTGCACATAAAGTGATCTGGCAGGAAGGTATGCTGCTGCGCCCACAGCACTTCCAGCAAAGCGATCGGTATCACGATGATCAATTGAAGGCACGTA CACGCCAACTGGGCAGCTATGCCTGGGGCTTCTTCAATCTGGTCATTGATCGCCAGTTTCTGAGCATGGGCAAACTCGTGATCAGCCAGGCCTCCGGCGT TCTGCCGGATGGCACGCTGTTTGAGCTGACCAGCGAGGGCGAGCCCCTGGCACTGGACATTCCCGCCAATACTAGTAGCACCTCCGTGTATCTAGCCCTG CCGCTGGTCACGGGCAACCATGTCGAGACACGCCGTCCCGAGCAGAAGGATGTGTTGGCTCGCTACCGTGCCTATGAGGCGGAAGTGGCTGACTCGAACG CTGGCGAGAGCATTATCAGTCAGGTCAGCTGCGGTCGCCCGGACTTCAAGCTGCTGCTTGGCGAGCGATCCAATGATGAAGCCTTCGTCAGGCTCAAGGT CTGTGAAGTGCTGGACACAACGCCGGACGGCGTCATCAGCCTGGATGGGGACTTCACCCCAACCTATCTTCATGTTCATGCTTCGGACTATCTGTTGTCC TGCCTGAAGGAGGTCATCAGCATGCTGGCCCACCGGGGCGACATCTTGGCCGAGCGTATCCGCGCCACCGGCAAGTTAGGCACCGCGGAAGTGGGCGACT TCATGATGCTCCAGCTGATCAATCGCTACGAGCCGACCCTGCGCCACTACCTCACACTTGAGCAGCTGCATCCTGAACCAATCTTCCGCGAATTACTTGG TCTTCTAGGTGAACTGGCCACCTTCTCGAACGAAACCAAGCGCCCGCGTCTGGATAACCGCTATCAGCACAGCGATCAGGCACAGAGCTTTCGCAAGCTG ATGGATTCGCTGCGCCATGTCCTGTCGATGGTGCTGGAGCAGCATGCGGTCGAGCTGATCCTGCAGCAGCGTCAGTACGGCATTCAGGTATCGCCACTGC ACGACCACAGTCTCATCACCTCCGCCTCCTTCGTGCTGGCGGCCAGTGCGCAATGCGACTCGGAAGAGCTACGCCAGCGCCTGCCGGCTCATCTGAAGAT CGGCCCGGTCGAGCGTATCCGCCAGCTGGTCAACCTGCACCTGCCCGGCATCCGGATCAAGCCCATGCCCGTTGCGCCGCGGCAGATTCCGTTCCATTCC GGCAAAACCTACTTCGCCCTCGAACTCAGTGCCGACGAACAGGCGCAACTGGAGCAGTCGGGCGGCTTCGCCATTCACGTGTCCGGTGATTTTCCCGGGC TCGAACTCAAATTCTGGGCAGTCAGGAGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGATGATCAAGGATCACGATTACGGTCAGGATGATAAAACCGTTGTGCTGAGCCGCCAGGGTACGGCGAGCTCGGCCCACAATCCGTTAACCGATTTTGC CGACTCGCCTCGCGTTGAGCAGCTGGAAGAACGGATGATCTATGCGGCCCGCCTGCGTCCGGCGGAAAGCTTCAACTTGAGCGTGAACCCGCTAATTGCT GCCGCCTCCGGCCTGCTGTCCGAAGTAGTTCAGTTAAAGCACAGCTATCACGCCGAAGACCTGTACGCCCTGAAAGAGCGCCTTACGACTGCCATCAAAC TGTTCGAGCATCGAGCCTTTGGCGAAGGCGCTGAAAGCGGCCAGGTCATGGCAGCGCGTTATGTGCTGTGCACCGTCATCGACGAAGCCGTGGTCACAAC ACCGTGGGGCAATGAAAGCGAATGGTCTCAAATGAGCCTTCTGAGCACCTTTCACAACGAGACCTTTGGTGGCGAGAAGTTTTTCCAGTTGCTGGAGCGT
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| Amino Acid Sequence |
>type VI secretion protein
MTAHKVIWQEGMLLRPQHFQQSDRYHDDQLKARTRQLGSYAWGFFNLVIDRQFLSMGKLVISQASGVLPDGTLFELTSEGEPLALDIPANTSSTSVYLAL PLVTGNHVETRRPEQKDVLARYRAYEAEVADSNAGESIISQVSCGRPDFKLLLGERSNDEAFVRLKVCEVLDTTPDGVISLDGDFTPTYLHVHASDYLLS CLKEVISMLAHRGDILAERIRATGKLGTAEVGDFMMLQLINRYEPTLRHYLTLEQLHPEPIFRELLGLLGELATFSNETKRPRLDNRYQHSDQAQSFRKL MDSLRHVLSMVLEQHAVELILQQRQYGIQVSPLHDHSLITSASFVLAASAQCDSEELRQRLPAHLKIGPVERIRQLVNLHLPGIRIKPMPVAPRQIPFHS GKTYFALELSADEQAQLEQSGGFAIHVSGDFPGLELKFWAVRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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