Pseudomonas sp. HPB0071, HMPREF1487_04776

Gene Feature Overview

Strain	Pseudomonas sp. HPB0071 GCF_000478505.2|latest
Locus Tag	HMPREF1487_04776
NCBI Locus Tag	HMPREF1487_RS02415
Name
Replicon	scaffold_1
Genomic location	476175 - 476687 (- strand)

Cross-References

RefSeq	WP_010795003.1
GI	498494267
INSDC	ENA36609.1
NCBI Locus Tag	HMPREF1487_RS02415
NCBI Old Locus Tag	HMPREF1487_04776
UniParc	UPI0002C9D34C
UniProtKB Acc	N2JC54
UniProtKB ID	N2JC54_9PSED
UniRef100	UniRef100_N2JC54
UniRef50	UniRef50_Q6FBE7
UniRef90	UniRef90_N2JC54

Product

Feature Type	CDS
Coding Frame	1
Product Name	sigma-70 family RNA polymerase sigma factor
Synonyms
Evidence for Translation
Charge (pH 7)	-2.66
Kyte-Doolittle Hydrophobicity Value	-0.061
Molecular Weight (kDa)	19.1
Isoelectric Point (pI)	6.24

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000463 (1798 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: HMPREF1487_04776 Search term: sigma-70 family RNA polymerase sigma factor

Human Homologs

References