Pseudomonas sp. HPB0071, HMPREF1487_04776

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. HPB0071 genomic scaffold aczIi-supercont1.1, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCACCAGCGGCCTGATCGGCAGGCGCGGGACCTCTTTGTGGCGGGCGTCTGTCGGGCGATTGCCTTGCCGCTTATCCAGATTCCGGTACAAGGGGCTTAT TCGACTGCGCAGGTGCGGGAAGAGATCATGGCTGTCTTACAGAAGGGCGGGGCCTTGACCTCGCGCAAACGCACAGCAGCCCGGCGCTCCAGCAAAGGGG AGGCGGCGAGCGAGGCAGCGTCTCCGATATGCTCGAAATGCGGCTCGCCCATGGTCATGCGCAAGGCCAGGCAAGGAAGCAATGCTGGCGCCTATTTCTG GGGCTGCAGCGCCTTTCCAGATTGCCGCAACATCGTACGCATTGAGGAGTAGTGTCCGCTGACGCTAACGTTTTATGTAATACCAGCCCATTTATAGTGG CAAGCTAAGCTTAACCCTTGTTGTAATCATCCAGGCTTGCATATAATGAGAACAATTATCATTAAGTGAATGCCTAGGATTCTAGCGCAAGGATATCGGT
DNA Sequence for Gene
>HMPREF1487_04776
GTGCACGCCAGCAGTACTTCACCACAGGGGGATCTTGGCCAGCTCTATCATGAGCATCGCTCCTGGGTATTTGGATGGTTGCGCCGGCGTCTGGGGTGCT CCGATAGTGCAGATGACTTGACCCACGATACGTTCATTCGCCTCCTGGGAAGTCAGGAGCTGGGCCGGCTTGCTGAACCTCGGGCTTTTCTCATTACTGT TGCCAAGCGTGTCCTATTCAATCATTACCGACGTCAGGATATCGAGCGGGCCTACCTGGATGCCTTGGCGGCCTTGCCTGAGCAGGAGGTTCCCAGCGAG GAAGTTCGTGCTATCGCTCTGGAAACACTTCTGGAGCTGGCTCGCGTATTGGATGGATTGGCTGAACCGATCAAACAGGCTTTTCTATTGGCACAGCTGG ACGGAATGCCATACGCCGATATCGCCGCACACCTCGGTATTTCGCTGGCAACCGTCAAGCGGTACATCGCCAAGGCTGCTCAGCAATGTTATTTCGCGGA GTGCATGGCGTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CAGCGCCCATCTCTCCCCAGATCGCCGAGCAGGCCGTGCAGTGGCTGGTAGAGCTGCAGGCGGGGGCAGGCGAGGAAGAGCATCGGGCCTGGCAACAATG GCGGGCCGCTGATCCTGAGCACGAGCGTGCCTGGCAGCGGATCGAGACCATCAACCAGCGGCTGCAGGGGTTGCCCTCAAAGGCTGCGCGTCAGGCTGTA TTGAGCAAGCCCGCATACGGTCGCCGCGAGGCGCTGAAGCTCATGGGGGTGTTTGCCCTCCTGGGCCCGGCCGCCTGGCTCTTAAAGGAGCGTGCCGAGC CCTGGTTGGCGGACTACCACACCCGGATTGGGGAACAGCGAACGGTTACCCTGACCGATGGCAGCCGCCTTGATCTGAATACCGACAGTGCTGTGAATGT CAGCATCACGGCTACGCAGCGTCAGCTCATGCTGATTCGTGGCGAGATACTGTTACACGCTGCCCATTCAGCCCTGCCATTTTCGGTACAGAGCCAGGCA
Amino Acid Sequence
>sigma-70 family RNA polymerase sigma factor
MHASSTSPQGDLGQLYHEHRSWVFGWLRRRLGCSDSADDLTHDTFIRLLGSQELGRLAEPRAFLITVAKRVLFNHYRRQDIERAYLDALAALPEQEVPSE EVRAIALETLLELARVLDGLAEPIKQAFLLAQLDGMPYADIAAHLGISLATVKRYIAKAAQQCYFAECMA
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site