Pseudomonas sp. P179, HMPREF1224_08310
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas sp. P179
GCF_000478485.2|latest |
| Locus Tag |
HMPREF1224_08310
|
| Name |
|
| Replicon | scaffold_1 |
| Genomic location | 3112695 - 3114554 (- strand) |
Cross-References
| RefSeq | WP_010793590.1 |
| GI | 498492821 |
| NCBI Locus Tag | HMPREF1224_08310 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
type VI secretion protein
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 0.60 |
| Kyte-Doolittle Hydrophobicity Value | -0.294 |
| Molecular Weight (kDa) | 69.4 |
| Isoelectric Point (pI) | 7.08 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000087 (1217 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: HMPREF1224_08310
Search term: type VI secretion protein
|
Human Homologs
References
No references are associated with this feature.